RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MRPS31Q92665 395 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 CDKL2Q92772 493 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 MYEOVQ96EZ4 313 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 TBL1YQ9BQ87 522 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 SLC25A51Q9H1U9 297 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 VCX3BQ9H321 246 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 GPAMQ9HCL2 828 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 TRPC7Q9HCX4 862 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 PIH1D1Q9NWS0 290 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 UBP1Q9NZI7 540 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 AGO1Q9UL18 857 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 PDE4DIPQ5VU43 2346 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 FAM237BA0A1B0GVD1 139 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 H0Y3Z8 333 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 FKBP6O75344 327 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 PIAS1O75925 651 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 OLFM2O95897 454 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 GLUD1P00367 558 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 C8AP07357 584 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 PDHA1P08559 390 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 IRF1P10914 325 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 GABRR2P28476 465 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 PGM1P36871 562 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 SERPINB9P50453 376 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 NEK3P51956 506 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 ERVFC1P60507 584 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 AP2B1P63010 937 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 SMAD3P84022 425 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 UBE3AQ05086 875 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 MPP3Q13368 585 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 OLIG2Q13516 323 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 FRG1Q14331 258 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 TRMT10BQ6PF06 316 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 RTL10Q7L3V2 364 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 MRPL43Q8N983 215 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 SPATA22Q8NHS9 363 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 PABPC5Q96DU9 382 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 ZNF419Q96HQ0 510 aaPredicted RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 C7orf26Q96N11 449 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 ZNF599Q96NL3 588 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 ZNF184Q99676 751 aaPredicted RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 LBHD1Q9BQE6 289 aaPredicted RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 TMEM120AQ9BXJ8 343 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 C1orf21Q9H246 121 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 ALG13Q9NP73 1137 aaKnown RBP12.97□□□□□ -0.33
CLK3-201ENST00000345005 NT5MQ9NPB1 228 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 DCTN4Q9UJW0 460 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 STOML2Q9UJZ1 356 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 RPS6KL1Q9Y6S9 549 aa12.97□□□□□ -0.33
CLK3-201ENST00000345005 DOCK6Q96HP0 2047 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 A0A1B0GVM2 712 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 LCHNA4D1U4 455 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 TCAF2A6NFQ2 919 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 C2orf71A6NGG8 1288 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 ENO4A6NNW6 628 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 CXorf49A8MYA2 514 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 PRAMEF11O60813 436 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 KRT38O76015 456 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 USP1O94782 785 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 MT-CYBP00156 380 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 SNRPAP09012 282 aaKnown RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 DLDP09622 509 aaKnown RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 SYN1P17600 705 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 CNTFP26441 200 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 RPL26P61254 145 aaKnown RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 IRX4P78413 519 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 GNA12Q03113 381 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 SLC10A7Q0GE19 358 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 ZNF177Q13360 481 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 RCN2Q14257 317 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 TXNDC8Q6A555 127 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 AAGABQ6PD74 315 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 CCDC117Q8IWD4 279 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLK3-201ENST00000345005 ARL14EPQ8N8R7 260 aaPredicted RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 IPMKQ8NFU5 416 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 SPPL3Q8TCT6 385 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 MTBPQ96DY7 904 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 IMP4Q96G21 291 aaKnown RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 ZFRQ96KR1 1074 aaKnown RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 GCNAQ96QF7 691 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 CYP2S1Q96SQ9 504 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 MIPEPQ99797 713 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 TRIM56Q9BRZ2 755 aaKnown RBP12.96□□□□□ -0.33
CLK3-201ENST00000345005 WWP1Q9H0M0 922 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 FAM96AQ9H5X1 160 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 SMYD2Q9NRG4 433 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 VPS45Q9NRW7 570 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 ARL8BQ9NVJ2 186 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 MKS1Q9NXB0 559 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 DLGAP2Q9P1A6 1054 aa12.96□□□□□ -0.33
CLK3-201ENST00000345005 MYLKQ15746 1914 aa12.96□□□□□ -0.34
CLK3-201ENST00000345005 GBF1Q92538 1859 aa12.96□□□□□ -0.34
CLK3-201ENST00000345005 ILVBLA1L0T0 632 aa12.95□□□□□ -0.34
CLK3-201ENST00000345005 H3BNC9 293 aa12.95□□□□□ -0.34
CLK3-201ENST00000345005 C1RP00736 705 aa12.95□□□□□ -0.34
CLK3-201ENST00000345005 PFKLP17858 780 aa12.95□□□□□ -0.34
CLK3-201ENST00000345005 CDC25CP30307 473 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms