RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CMTM8Q8IZV2 173 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 FUKQ8N0W3 1084 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 PIH1D1Q9NWS0 290 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 MIOSQ9NXC5 875 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 COLEC10Q9Y6Z7 277 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 FAM95CA0A1B0GW59 222 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 USP12O75317 370 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 TM7SF2O76062 418 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 PECAM1P16284 738 aaPredicted RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 CHRNB2P17787 502 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 TNNI3P19429 210 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 KRT20P35900 424 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 HSD17B3P37058 310 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 MAGEA10P43363 369 aaPredicted RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 C2orf27AQ580R0 203 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SH2D3CQ8N5H7 860 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 PTCD2Q8WV60 388 aaKnown RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 ZMAT2Q96NC0 199 aaKnown RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 KLF6Q99612 283 aaPredicted RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 COPS8Q99627 209 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SIX2Q9NPC8 291 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 TELO2Q9Y4R8 837 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 URADA6NGE7 173 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 BTN3A1O00481 513 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 PTP4A2Q12974 167 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 FAM151BQ6UXP7 276 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 RERGQ96A58 199 aaPredicted RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 LRRC19Q9H756 370 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 GULP1Q9UBP9 304 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SIX4Q9UIU6 781 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 GMEB2Q9UKD1 530 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 TNPO3Q9Y5L0 923 aaKnown RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 GMNCA6NCL1 334 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 GUCY1B2O75343 617 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 OAZ2O95190 189 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 RASGRP1O95267 797 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 MAD2L1Q13257 205 aaPredicted RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 CLEC4CQ8WTT0 213 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 HLA-CQ95604 372 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SIPA1Q96FS4 1042 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 PTPRHQ9HD43 1115 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 CRTAC1Q9NQ79 661 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SPATA6Q9NWH7 488 aaPredicted RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 MGAT4DA6NG13 374 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 LRCH4O75427 683 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 RPP40O75818 363 aaKnown RBP10.24□□□□□ -0.77
USP54-201ENST00000339859 ANXA5P08758 320 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 TYRP14679 529 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 CHN1P15882 459 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 IDSP22304 550 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 GLRBP48167 497 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 RPIAP49247 311 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 KRT78Q8N1N4 520 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 OR56A4Q8NGH8 313 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 ARL8AQ96BM9 186 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 KLHL32Q96NJ5 620 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SMOQ99835 787 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 SLC25A51Q9H1U9 297 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 RETREG1Q9H6L5 497 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 YY1AP1Q9H869 796 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 ARL15Q9NXU5 204 aa10.24□□□□□ -0.77
USP54-201ENST00000339859 BCLAF3A2AJT9 711 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 GCATO75600 419 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 RASSF9O75901 435 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 HOXB2P14652 356 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 RPL21P46778 160 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 CACNG1Q06432 222 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 MARCH8Q5T0T0 291 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 UBXN11Q5T124 520 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 CYP20A1Q6UW02 462 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 RRM2BQ7LG56 351 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 TMCO2Q7Z6W1 182 aaPredicted RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 GPSM1Q86YR5 675 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NIPA2Q8N8Q9 360 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 PHC3Q8NDX5 983 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 QRFPRQ96P65 431 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 C10orf88Q9H8K7 445 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 PCYOX1Q9UHG3 505 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 CHKBQ9Y259 395 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 TMEM189-UBE2V1I3L0A0 370 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 M0QZQ0 153 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 TBX18O95935 607 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NEK3P51956 506 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 CRTC3Q6UUV7 619 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NOA1Q8NC60 698 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 HDAC7Q8WUI4 952 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 SLC35F5Q8WV83 523 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 ASB2Q96Q27 587 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NDEL1Q9GZM8 345 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 SLCO1B7G3V0H7 640 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 CD3EAPO15446 510 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 LATS1O95835 1130 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 ALADP13716 330 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 RPL22P35268 128 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 CES3Q6UWW8 571 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 PCYOX1LQ8NBM8 494 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 EBF3Q9H4W6 596 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 ADA2Q9NZK5 511 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 C5orf60A6NFR6 353 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NBNO60934 754 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms