RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PTGIRP43119 386 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 PXNP49023 591 aaPredicted RBP22.39■■□□□ 1.18
SDC3-202ENST00000339394 DR1Q01658 176 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 ZBTB16Q05516 673 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 ZNF805Q5CZA5 627 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 TMEM31Q5JXX7 168 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 RASSF3Q86WH2 238 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 TAB3Q8N5C8 712 aaPredicted RBP22.39■■□□□ 1.18
SDC3-202ENST00000339394 L2HGDHQ9H9P8 463 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 PRMT8Q9NR22 394 aaPredicted RBP22.39■■□□□ 1.18
SDC3-202ENST00000339394 FAM153AQ9UHL3 310 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 RAI2Q9Y5P3 530 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 HTRA2O43464 458 aaPredicted RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 SOCS5O75159 536 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 DNTTP04053 509 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 C5AR1P21730 350 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 TRAF2Q12933 501 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 FAXCQ5TGI0 409 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 TSSK4Q6SA08 328 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 KIAA1324Q6UXG2 1013 aaKnown RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 MAML2Q8IZL2 1156 aaPredicted RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 CEP112Q8N8E3 955 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 C1QTNF1Q9BXJ1 281 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 VPS45Q9NRW7 570 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 EBF1Q9UH73 591 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 CKAP5Q14008 2032 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 CTAGE15A4D2H0 777 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 PMPCBO75439 489 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 CTAGE8P0CG41 777 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 DHX34Q14147 1143 aaKnown RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 PRPSAP1Q14558 356 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 PPP1R7Q15435 360 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 C4orf22Q6V702 233 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 CTAGE6Q86UF2 777 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 CTAGE4Q8IX94 777 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 AADATQ8N5Z0 425 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 PDCD6IPQ8WUM4 868 aaKnown RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 ARRDC3Q96B67 414 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 ECHDC3Q96DC8 303 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 PPP1R16AQ96I34 528 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 MLPHQ9BV36 600 aaPredicted RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 TDRD1Q9BXT4 1180 aaKnown RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 ETNK1Q9HBU6 452 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 RAB6BQ9NRW1 208 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 SCML1Q9UN30 329 aa22.38■■□□□ 1.17
SDC3-202ENST00000339394 AAR2Q9Y312 384 aaKnown RBP22.38■■□□□ 1.17
SDC3-202ENST00000339394 WDFY4Q6ZS81 3184 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 TTI1O43156 1089 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 ANXA9O76027 345 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 ACADMP11310 421 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 ITGB7P26010 798 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 DRD3P35462 400 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 VPS41P49754 854 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 MRPS25P82663 173 aaKnown RBP22.37■■□□□ 1.17
SDC3-202ENST00000339394 SLC14A2Q15849 920 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 PCSK7Q16549 785 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 ZSWIM9Q86XI8 627 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 HCAR2Q8TDS4 363 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 PPP1R2P1Q96PQ5 205 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 CARD6Q9BX69 1037 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 PABPC3Q9H361 631 aaKnown RBP22.37■■□□□ 1.17
SDC3-202ENST00000339394 DYRK4Q9NR20 520 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 PCDHB9Q9Y5E1 797 aa22.37■■□□□ 1.17
SDC3-202ENST00000339394 CUL9Q8IWT3 2517 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 C16orf96A6NNT2 1141 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 PLK4O00444 970 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 FZD6O60353 706 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 PRLP01236 227 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 PDHA1P08559 390 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 TDGF1P13385 188 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 HOXA6P31267 233 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 FDFT1P37268 417 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 GPS1Q13098 491 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 MPP3Q13368 585 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 TTC31Q49AM3 519 aaPredicted RBP22.36■■□□□ 1.17
SDC3-202ENST00000339394 CFAP58Q5T655 872 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 KDELC1Q6UW63 502 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 KDELC2Q7Z4H8 507 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 MAATS1Q7Z4T9 603 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 JAMLQ86YT9 394 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 KLHDC8BQ8IXV7 354 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 HDDC3Q8N4P3 179 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 MRGPRX2Q96LB1 330 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 TPSD1Q9BZJ3 242 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 CD93Q9NPY3 652 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 ITM2CQ9NQX7 267 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 FBXL12Q9NXK8 326 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 DKK3Q9UBP4 350 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 SERGEFQ9UGK8 458 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 CHKBQ9Y259 395 aa22.36■■□□□ 1.17
SDC3-202ENST00000339394 A0A1W2PP55 124 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 RNASEH2AO75792 299 aaKnown RBP22.35■■□□□ 1.17
SDC3-202ENST00000339394 PGLSO95336 258 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 CA4P22748 312 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 TPMTP51580 245 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 GEMP55040 296 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 WNT3AP56704 352 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 CSTF1Q05048 431 aaKnown RBP22.35■■□□□ 1.17
SDC3-202ENST00000339394 DMWDQ09019 674 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 CNTN1Q12860 1018 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms