RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PIWIL4Q7Z3Z4 852 aaKnown RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 TMEM86AQ8N2M4 240 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 LZTR1Q8N653 840 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CAMKK2Q96RR4 588 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 GAD1Q99259 594 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 POPDC2Q9HBU9 364 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 TRMT13Q9NUP7 481 aaKnown RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 SEMA3DO95025 777 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ZBTB11O95625 1053 aaPredicted RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 URODP06132 367 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CNPP09543 421 aaKnown RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 EPHA3P29320 983 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ABATP80404 500 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 MTX3Q5HYI7 312 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 C6orf52Q5T4I8 152 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ADAM32Q8TC27 787 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 UCMAQ8WVF2 138 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 SENP8Q96LD8 212 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 MECRQ9BV79 373 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CDH19Q9H159 772 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 RRAGCQ9HB90 399 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ZSCAN32Q9NX65 697 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CLUHO75153 1309 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 GNG14A0A1W2PPG7 69 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 SAGE2PA6NJ88 616 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 HAT1O14929 419 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 BANF1O75531 89 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 LYPLA1O75608 230 aaPredicted RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 KCNH1O95259 989 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 NPR3P17342 541 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 GPC1P35052 558 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 TBX4P57082 545 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 NOMO3P69849 1222 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 BEX3Q00994 111 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 KLF10Q13118 480 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 RDH11Q8TC12 318 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 MYLPFQ96A32 169 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 C7orf26Q96N11 449 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 EPB41L4BQ9H329 900 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 DHX33Q9H6R0 707 aaKnown RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 SAE1Q9UBE0 346 aaPredicted RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 TCRBV9S1A1TA0A576 114 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 H7C0S8 307 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 LTFP02788 710 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ZNF37AP17032 561 aaPredicted RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 RENBPP51606 427 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CDC42P60953 191 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 GRIK3Q13003 919 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CERS2Q96G23 380 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 SERPINB11Q96P15 392 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 GPATCH1Q9BRR8 931 aaKnown RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 NOL11Q9H8H0 719 aaKnown RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 ERVK-5Q9HDB9 667 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 NMRK2Q9NPI5 230 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 SCUBE2Q9NQ36 999 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CLDN25C9JDP6 229 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 SEC22BO75396 215 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 RGS20O76081 388 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PEX2P28328 305 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 ZNF143P52747 638 aaPredicted RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 C15orf59Q2T9L4 293 aaPredicted RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 PDCD4Q53EL6 469 aaKnown RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 ILDR2Q71H61 639 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 DNAJB14Q8TBM8 379 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 ACE2Q9BYF1 805 aaPredicted RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 ULBP1Q9BZM6 244 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 CXorf21Q9HAI6 301 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PCDH12Q9NPG4 1184 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 KLHL1Q9NR64 748 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 STOML2Q9UJZ1 356 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 VPS28Q9UK41 221 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 SNCAIPQ9Y6H5 919 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 TRAFD1O14545 582 aaPredicted RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 FARP2O94887 1054 aaPredicted RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 RGPD2P0DJD1 1756 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PABPC1P11940 636 aaKnown RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 YBX3P16989 372 aaKnown RBP eCLIP11.59□□□□□ -0.55
VPS39-201ENST00000318006 S100A3P33764 101 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 CCNFP41002 786 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 TUBP50607 506 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 ZNF135P52742 658 aaPredicted RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 ITGA7Q13683 1181 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 FAM187BQ17R55 369 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PYDC2Q56P42 97 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 FAR1Q8WVX9 515 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 EBF3Q9H4W6 596 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 LRRC4CQ9HCJ2 640 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PNPOQ9NVS9 261 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 TAS2R13Q9NYV9 303 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 FAM208AQ9UK61 1670 aaKnown RBP11.59□□□□□ -0.55
VPS39-201ENST00000318006 PLIN4Q96Q06 1357 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 RAMP2O60895 175 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 CCNE2O96020 404 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 NOS2P35228 1153 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 SLC7A2P52569 658 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PCBP1Q15365 356 aaKnown RBP eCLIP11.59□□□□□ -0.55
VPS39-201ENST00000318006 C5orf22Q49AR2 442 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 ABHD15Q6UXT9 468 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 HERC6Q8IVU3 1022 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 TBC1D21Q8IYX1 336 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms