RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 SLC1A1P43005 524 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 TRAF2Q12933 501 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 GRIK2Q13002 908 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 KIF19Q2TAC6 998 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 FAM46CQ5VWP2 391 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 C11orf63Q6NUN7 778 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 SLC23A3Q6PIS1 610 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 KDELC2Q7Z4H8 507 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 DSG4Q86SJ6 1040 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 ZC3H18Q86VM9 953 aaKnown RBP12.18□□□□□ -0.46
SCFD1-201ENST00000311943 PELI3Q8N2H9 469 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 KIAA1524Q8TCG1 905 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 PDCD6IPQ8WUM4 868 aaKnown RBP12.18□□□□□ -0.46
SCFD1-201ENST00000311943 PSKH2Q96QS6 385 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 RETREG1Q9H6L5 497 aa12.18□□□□□ -0.46
SCFD1-201ENST00000311943 RCOR3Q9P2K3 495 aaPredicted RBP12.18□□□□□ -0.46
SCFD1-201ENST00000311943 ASCC3Q8N3C0 2202 aaKnown RBP12.18□□□□□ -0.46
SCFD1-201ENST00000311943 TRAFD1O14545 582 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-201ENST00000311943 APOL1O14791 398 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 DDX3YO15523 660 aaKnown RBP12.17□□□□□ -0.46
SCFD1-201ENST00000311943 IPO7O95373 1038 aaKnown RBP12.17□□□□□ -0.46
SCFD1-201ENST00000311943 JCHAINP01591 159 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 NEK3P51956 506 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 ITKQ08881 620 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 KIF5AQ12840 1032 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 E2F5Q15329 346 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 TAZQ16635 292 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 ZNF284Q2VY69 593 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 TMCO4Q5TGY1 634 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 STPG1Q5TH74 334 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 LRRC38Q5VT99 294 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 RFLNAQ6ZTI6 216 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 MAP7D3Q8IWC1 876 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 LZTR1Q8N653 840 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 FOXJ1Q92949 421 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 SERAC1Q96JX3 654 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 AASDHPPTQ9NRN7 309 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 RBM22Q9NW64 420 aaKnown RBP eCLIP12.17□□□□□ -0.462e-7■■■■□ 25.7
SCFD1-201ENST00000311943 SEPT10Q9P0V9 454 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 SCML1Q9UN30 329 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 FNDC3AQ9Y2H6 1198 aaKnown RBP12.17□□□□□ -0.46
SCFD1-201ENST00000311943 LRRK1Q38SD2 2015 aa12.17□□□□□ -0.46
SCFD1-201ENST00000311943 POM121BA6NF01 834 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ZSCAN5CA6NGD5 496 aaPredicted RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SCAMP1O15126 338 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 LATO43561 262 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SERPINF2P08697 491 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ALPIP09923 528 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 CD27P26842 260 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 CTNNA1P35221 906 aaKnown RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 MMP13P45452 471 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 AP1B1Q10567 949 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ZNF542PQ5EBM4 170 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SYCP2LQ5T4T6 812 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 MARC1Q5VT66 337 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 KCTD16Q68DU8 428 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 MINDY1Q8N5J2 469 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 CCDC114Q96M63 670 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 OLFM3Q96PB7 478 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SEMA3CQ99985 751 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SUV39H2Q9H5I1 410 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 DYRK4Q9NR20 520 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 MBNL1Q9NR56 388 aaKnown RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 PCDHA3Q9Y5H8 950 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 TRPM6Q9BX84 2022 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 LRRC72A6NJI9 287 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 AREL1O15033 823 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 PSTPIP1O43586 416 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ZRANB2O95218 330 aaKnown RBP eCLIP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 CCNB1P14635 433 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 CTPS1P17812 591 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 GEMIN4P57678 1058 aaKnown RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 GSDMDP57764 484 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 FAM193AP78312 1265 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ZNF235Q14590 738 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 TCEA2Q15560 299 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 DUOXA1Q1HG43 343 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SPDYCQ5MJ68 293 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 WDR45BQ5MNZ6 344 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 MICALCLQ6ZW33 695 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ADAT2Q7Z6V5 191 aaKnown RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 C11orf74Q86VG3 221 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SPATS2Q86XZ4 545 aaKnown RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 KATNAL2Q8IYT4 538 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SPATA22Q8NHS9 363 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 ARRDC2Q8TBH0 407 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 AGAP3Q96P47 875 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 MGME1Q9BQP7 344 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 HDAC8Q9BY41 377 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 PCDH12Q9NPG4 1184 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 UBP1Q9NZI7 540 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 PNMA8BQ9ULN7 279 aaPredicted RBP12.16□□□□□ -0.46
SCFD1-201ENST00000311943 SLC6A14Q9UN76 642 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 CACNA1EQ15878 2313 aa12.16□□□□□ -0.46
SCFD1-201ENST00000311943 A0A1W2PR77 199 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 BTNL10A8MVZ5 291 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 ARHGAP33O14559 1287 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 MATN3O15232 486 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 MMP2P08253 660 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms