RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 ITPKAP23677 461 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 NFKBIAP25963 317 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 RGRP47804 291 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ATP5OP48047 213 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 MAXP61244 160 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SPEM2Q0P670 501 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 BRAT1Q6PJG6 821 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ALYREFQ86V81 257 aaKnown RBP11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ZC3H18Q86VM9 953 aaKnown RBP11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SYT12Q8IV01 421 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TEX26Q8N6G2 289 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 C12orf50Q8NA57 414 aaPredicted RBP11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TTC13Q8NBP0 860 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PDCD6IPQ8WUM4 868 aaKnown RBP11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 LRRN4Q8WUT4 740 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 FAM131CQ96AQ9 280 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SUV39H2Q9H5I1 410 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 VPS45Q9NRW7 570 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TMEM131Q92545 1883 aa11.12□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 A0A1W2PQ67 120 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PRR5-ARHGAP8B1AHC4 643 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 KCNK1O00180 336 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 MUSKO15146 869 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 AP1G1O43747 822 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 KIF5CO60282 957 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 FOXD2O60548 495 aaPredicted RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SOCS5O75159 536 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 JCHAINP01591 159 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 HLA-DQB2P05538 268 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CES1P23141 567 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 NUDT1P36639 197 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CCR5P51681 352 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SUOXP51687 545 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 IFI35P80217 286 aaPredicted RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 OTUD4Q01804 1114 aaKnown RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ELP6Q0PNE2 266 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 NOMO1Q15155 1222 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CCDC6Q16204 474 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 DUOXA1Q1HG43 343 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SETMARQ53H47 684 aaPredicted RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 MEI1Q5TIA1 1274 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 KIAA1161Q6NSJ0 714 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 AADACL2Q6P093 401 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ERAP2Q6P179 960 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 NEK5Q6P3R8 708 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TTC7BQ86TV6 843 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PRPF39Q86UA1 669 aaKnown RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ZSCAN30Q86W11 494 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TRIM69Q86WT6 500 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CAMK1DQ8IU85 385 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CDKL3Q8IVW4 592 aaPredicted RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PGBD5Q8N414 524 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ZCCHC9Q8N567 271 aaKnown RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CEP76Q8TAP6 659 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 HCAR2Q8TDS4 363 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CXorf40AQ8TE69 158 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 BIRC7Q96CA5 298 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 QKIQ96PU8 341 aaKnown RBP eCLIP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SEMA3CQ99985 751 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 NUSAP1Q9BXS6 441 aaKnown RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TRMT1Q9NXH9 659 aaKnown RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SAE1Q9UBE0 346 aaPredicted RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 DKK3Q9UBP4 350 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 EIF2B4Q9UI10 523 aaKnown RBP11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PILRBQ9UKJ0 227 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 GON4LQ3T8J9 2241 aa11.11□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 USP34Q70CQ2 3546 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 A0A1B0GTW7 788 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 A0A1W2PPC4 97 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TSPAN11A1L157 253 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 UPK3BL1B0FP48 263 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 UPK3BL2E5RIL1 263 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 RNF103O00237 685 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 KCNK3O14649 394 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 KHNYNO15037 678 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TSPAN6O43657 245 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 RNGTTO60942 597 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 STK10O94804 968 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CPP00450 1065 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CFIP05156 583 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 SERPINF2P08697 491 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CR2P20023 1033 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 CD27P26842 260 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 MAOBP27338 520 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 MAT2AP31153 395 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ABL2P42684 1182 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TNNT3P45378 269 aaPredicted RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 EIF3EP60228 445 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PPP2CBP62714 309 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 POLR2LP62875 67 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 RPS21P63220 83 aaKnown RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PPP2CAP67775 309 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 DSC2Q02487 901 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ADCY2Q08462 1091 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 ZBTB17Q13105 803 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 XRCC4Q13426 336 aa11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 PRKD1Q15139 912 aaPredicted RBP11.1□□□□□ -0.63
CSPG4P1Y-201ENST00000306641 TEAD4Q15561 434 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms