RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 EHD1Q9H4M9 534 aa11.02□□□□□ -0.65
LSM3-201ENST00000306024 VRTNQ9H8Y1 702 aa11.02□□□□□ -0.65
LSM3-201ENST00000306024 PCDH12Q9NPG4 1184 aa11.02□□□□□ -0.65
LSM3-201ENST00000306024 ARHGEF4Q9NR80 690 aa11.02□□□□□ -0.65
LSM3-201ENST00000306024 SMYD2Q9NRG4 433 aa11.02□□□□□ -0.65
LSM3-201ENST00000306024 TAF4O00268 1085 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 PRRG1O14668 218 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 NRP1O14786 923 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 CHEK2O96017 543 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 BPGMP07738 259 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 COL6A1P12109 1028 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 TKTL1P51854 596 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 ROR1Q01973 937 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 PIGHQ14442 188 aaPredicted RBP11.01□□□□□ -0.65
LSM3-201ENST00000306024 DSC3Q14574 896 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 BTBD8Q5XKL5 378 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 LCLAT1Q6UWP7 414 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 CYP2R1Q6VVX0 501 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 FRMD7Q6ZUT3 714 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 PAF1Q8N7H5 531 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 TERB1Q8NA31 727 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SMARCD1Q96GM5 515 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SCYL1Q96KG9 808 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 CIB1Q99828 191 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 PKP2Q99959 881 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 AVENQ9NQS1 362 aaPredicted RBP11.01□□□□□ -0.65
LSM3-201ENST00000306024 GDAP2Q9NXN4 497 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SCN10AQ9Y5Y9 1956 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 MYBPHLA2RUH7 354 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 NOTOA8MTQ0 251 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 GPC4O75487 556 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 NPR3P17342 541 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 MMP8P22894 467 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 RPL22P35268 128 aaKnown RBP11.01□□□□□ -0.65
LSM3-201ENST00000306024 ZBTB6Q15916 424 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 ANO4Q32M45 955 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 KCNT1Q5JUK3 1230 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.01□□□□□ -0.659e-10■□□□□ 10.1
LSM3-201ENST00000306024 PHF13Q86YI8 300 aaPredicted RBP11.01□□□□□ -0.65
LSM3-201ENST00000306024 TNIP2Q8NFZ5 429 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 DLG3Q92796 817 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 MYLPFQ96A32 169 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 ATXN7L3BQ96GX2 97 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 CPXM1Q96SM3 734 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 KLC2Q9H0B6 622 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 GIMAP4Q9NUV9 329 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 STK39Q9UEW8 545 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SLC8A2Q9UPR5 921 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 TP73O15350 636 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SERPINE1P05121 402 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 RALBP11234 206 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 CCNA2P20248 432 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 GPD1P21695 349 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 GSSP48637 474 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 FPGSQ05932 587 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 FUT10Q6P4F1 479 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 BORAQ6PGQ7 559 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 LAYNQ6UX15 382 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 ANKRD33Q7Z3H0 272 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 TMCO2Q7Z6W1 182 aaPredicted RBP11.01□□□□□ -0.65
LSM3-201ENST00000306024 FIBCD1Q8N539 461 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SLC43A3Q8NBI5 491 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 SPATA18Q8TC71 538 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 B3GALT6Q96L58 329 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 COQ10BQ9H8M1 238 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 EFCAB1Q9HAE3 211 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 TCF7L2Q9NQB0 619 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 CDC14AQ9UNH5 594 aa11.01□□□□□ -0.65
LSM3-201ENST00000306024 F5H423 210 aaPredicted RBP11□□□□□ -0.65
LSM3-201ENST00000306024 AP3B1O00203 1094 aa11□□□□□ -0.65
LSM3-201ENST00000306024 ADAM23O75077 832 aa11□□□□□ -0.65
LSM3-201ENST00000306024 CLASP2O75122 1294 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 DAB1O75553 588 aa11□□□□□ -0.65
LSM3-201ENST00000306024 STAU1O95793 577 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 GARSP41250 739 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 KLF10Q13118 480 aa11□□□□□ -0.65
LSM3-201ENST00000306024 CLLU1OSQ5K130 101 aa11□□□□□ -0.65
LSM3-201ENST00000306024 DPY19L2P1Q6NXN4 242 aa11□□□□□ -0.65
LSM3-201ENST00000306024 RTN4RL1Q86UN2 441 aaPredicted RBP11□□□□□ -0.65
LSM3-201ENST00000306024 RXFP2Q8WXD0 754 aa11□□□□□ -0.65
LSM3-201ENST00000306024 ADNPQ9H2P0 1102 aa11□□□□□ -0.65
LSM3-201ENST00000306024 PCDHB5Q9Y5E4 795 aa11□□□□□ -0.65
LSM3-201ENST00000306024 CITO14578 2027 aa11□□□□□ -0.65
LSM3-201ENST00000306024 AP1G1O43747 822 aa11□□□□□ -0.65
LSM3-201ENST00000306024 DDHD2O94830 711 aa11□□□□□ -0.65
LSM3-201ENST00000306024 FUCA1P04066 466 aa11□□□□□ -0.65
LSM3-201ENST00000306024 KRT7P08729 469 aa11□□□□□ -0.65
LSM3-201ENST00000306024 NAT1P18440 290 aa11□□□□□ -0.65
LSM3-201ENST00000306024 XRCC1P18887 633 aaPredicted RBP11□□□□□ -0.65
LSM3-201ENST00000306024 NR4A1P22736 598 aa11□□□□□ -0.65
LSM3-201ENST00000306024 WARSP23381 471 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 TTKP33981 857 aa11□□□□□ -0.65
LSM3-201ENST00000306024 RPL7AP62424 266 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 UPP1Q16831 310 aa11□□□□□ -0.65
LSM3-201ENST00000306024 MSS51Q4VC12 460 aa11□□□□□ -0.65
LSM3-201ENST00000306024 FAM35AQ86V20 835 aa11□□□□□ -0.65
LSM3-201ENST00000306024 OSTM1Q86WC4 334 aa11□□□□□ -0.65
LSM3-201ENST00000306024 ZCCHC7Q8N3Z6 543 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 CPT1BQ92523 772 aa11□□□□□ -0.65
LSM3-201ENST00000306024 RCN3Q96D15 328 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms