RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PIK3C3Q8NEB9 887 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 USP7Q93009 1102 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 MARK4Q96L34 752 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 MROH8Q9H579 483 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ASB7Q9H672 318 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 FAM198AQ9UFP1 575 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF24P17028 368 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 CD151P48509 253 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 OCLNQ16625 522 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZFPM1Q8IX07 1006 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SEC22BO75396 215 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 LYPLA2O95372 231 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ASS1P00966 412 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 MIPP30301 263 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SLC11A2P49281 568 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 PARP6Q2NL67 630 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 MTSS1LQ765P7 747 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 OR56A4Q8NGH8 313 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF180Q9UJW8 692 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 OGDHLQ9ULD0 1010 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SLC12A4Q9UP95 1085 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 PPP1R11O60927 126 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 NUDT14O95848 222 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 PRLP01236 227 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF806P0C7X5 589 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 CHKAP35790 457 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 FOLH1Q04609 750 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SPIDRQ14159 915 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 EIF2S3LQ2VIR3 472 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 CPB2Q96IY4 423 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZMYM5Q9UJ78 669 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 PCDHA11Q9Y5I1 949 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ASTN2O75129 1339 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 hCG_1818297A0A087WSY0 165 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 CHP2O43745 196 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SLC6A3Q01959 620 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 FAAP100Q0VG06 881 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 CRY2Q49AN0 593 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 GPR107Q5VW38 600 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 FBXO16Q8IX29 292 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 DCP1BQ8IZD4 617 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 PARP8Q8N3A8 854 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SMYD1Q8NB12 490 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 TLCD1Q96CP7 247 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ELL3Q9HB65 397 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 GPATCH2LQ9NWQ4 482 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 LGALS13Q9UHV8 139 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 PPIEQ9UNP9 301 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 F8VP50 259 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 DPEP1P16444 411 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 RPL14P50914 215 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 IL27RAQ6UWB1 636 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 OFCC1Q8IZS5 231 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 STARD8Q92502 1023 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 FGFBP2Q9BYJ0 223 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 RAPGEFL1Q9UHV5 662 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ADAM28Q9UKQ2 775 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 AKAP11Q9UKA4 1901 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ACKR2O00590 384 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ABLIM1O14639 778 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 TRIM3O75382 744 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 OXCT1P55809 520 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF549Q6P9A3 640 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 TDRD1Q9BXT4 1180 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ERVK-5Q9HDB9 667 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 MYO5AQ9Y4I1 1855 aaKnown RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 DYNC1LI2O43237 492 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 PTPN1P18031 435 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TUBA4AP68366 448 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 CDH17Q12864 832 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 ESRP1Q6NXG1 681 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 FAM53CQ9NYF3 392 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 AGPSO00116 658 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 COLGALT1Q8NBJ5 622 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 MINDY2Q8NBR6 621 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 OSGEPL1Q9H4B0 414 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TBC1D13Q9NVG8 400 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 UBP1Q9NZI7 540 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TBC1D24Q9ULP9 559 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 CORO2BQ9UQ03 480 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 MTA2O94776 668 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 GP5P40197 560 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 GALK1P51570 392 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 PPATQ06203 517 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 FAM187BQ17R55 369 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TRABD2AQ86V40 505 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 EMILIN2Q9BXX0 1053 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 AKAP7Q9P0M2 348 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TRUB2O95900 331 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 ENPEPQ07075 957 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 PTGES3Q15185 160 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 LRRC20Q8TCA0 184 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 DHRS7Q9Y394 339 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 A0A087X1B8 175 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 IFRD1O00458 451 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 RTN3O95197 1032 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 HIST1H2ABP04908 130 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 SKIV2LQ15477 1246 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 USF2Q15853 346 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 BHLHB9Q6PI77 547 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms