RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 KRT86O43790 486 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 RNGTTO60942 597 aaKnown RBP13.51□□□□□ -0.25
VPS28-201ENST00000292510 PCDH8O95206 1070 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 PYGMP11217 842 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 GNSP15586 552 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 TIMP2P16035 220 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CR2P20023 1033 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CCNCP24863 283 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CD27P26842 260 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 HOXD12P35452 270 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 DPP6P42658 865 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CSNK1DP48730 415 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CCR5P51681 352 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 RWDD2BP57060 319 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 BCL2L1Q07817 233 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CCDC15Q0P6D6 951 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 ZNF211Q13398 564 aaPredicted RBP13.51□□□□□ -0.25
VPS28-201ENST00000292510 HNRNPDQ14103 355 aaKnown RBP13.51□□□□□ -0.25
VPS28-201ENST00000292510 TFDP2Q14188 446 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SEL1L3Q68CR1 1132 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 TIGD7Q6NT04 549 aaPredicted RBP13.51□□□□□ -0.25
VPS28-201ENST00000292510 SLC23A3Q6PIS1 610 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SYCE1Q8N0S2 351 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 BBS5Q8N3I7 341 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 RNF10Q8N5U6 811 aaKnown RBP13.51□□□□□ -0.25
VPS28-201ENST00000292510 TEX26Q8N6G2 289 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SLC6A18Q96N87 628 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CEP41Q9BYV8 373 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 KCNF1Q9H3M0 494 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 KDM4CQ9H3R0 1056 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SUV39H2Q9H5I1 410 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 CAPN10Q9HC96 672 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 PREBQ9HCU5 417 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 TM9SF3Q9HD45 589 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SCUBE2Q9NQ36 999 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 RBM22Q9NW64 420 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS28-201ENST00000292510 SUSD2Q9UGT4 822 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SLC6A14Q9UN76 642 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 ZFR2Q9UPR6 939 aaKnown RBP13.51□□□□□ -0.25
VPS28-201ENST00000292510 PPP2R2CQ9Y2T4 447 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 TTLL3Q9Y4R7 772 aa13.51□□□□□ -0.25
VPS28-201ENST00000292510 SPTBN4Q9H254 2564 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 A0A1B0GTW7 788 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 WNT9AO14904 365 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 BCAT2O15382 392 aaPredicted RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 LATO43561 262 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 NRDCO43847 1150 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PRKCGP05129 697 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 HLA-DQB2P05538 268 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PTMAP06454 111 aaKnown RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 SERPINF2P08697 491 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 CCNB1P14635 433 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PRLRP16471 622 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 SERPINA4P29622 427 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 HSPA9P38646 679 aaKnown RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 AP1S1P61966 158 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 SEMG2Q02383 582 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PPIDQ08752 370 aaKnown RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 ITKQ08881 620 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 AP1B1Q10567 949 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 ZBTB17Q13105 803 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PDK1Q15118 436 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PPP2R5EQ16537 467 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 TTC7BQ86TV6 843 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 TRIM69Q86WT6 500 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 CEP76Q8TAP6 659 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 ANP32BQ92688 251 aaKnown RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 PDLIM2Q96JY6 352 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 NUDCD1Q96RS6 583 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 TUBGCP5Q96RT8 1024 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 MYOCQ99972 504 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 EDEM2Q9BV94 578 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 NUSAP1Q9BXS6 441 aaKnown RBP13.5□□□□□ -0.25
VPS28-201ENST00000292510 ATP13A3Q9H7F0 1226 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 NOD2Q9HC29 1040 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 SEPT10Q9P0V9 454 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 DKK3Q9UBP4 350 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 CA5BQ9Y2D0 317 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PCDHGC4Q9Y5F7 938 aa13.5□□□□□ -0.25
VPS28-201ENST00000292510 PI4KAP42356 2102 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 TSPAN11A1L157 253 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 NEMP1O14524 444 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 TRAFD1O14545 582 aaPredicted RBP13.49□□□□□ -0.25
VPS28-201ENST00000292510 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
VPS28-201ENST00000292510 AREL1O15033 823 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 SLC31A1O15431 190 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 AP1G1O43747 822 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 NEBLO76041 1014 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 JCHAINP01591 159 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 ENGP17813 658 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 TGM2P21980 687 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 XPAP23025 273 aaPredicted RBP13.49□□□□□ -0.25
VPS28-201ENST00000292510 MAPK8P45983 427 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 CSNK1EP49674 416 aaKnown RBP13.49□□□□□ -0.25
VPS28-201ENST00000292510 COPS2P61201 443 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 BNC1Q01954 994 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 DSC2Q02487 901 aa13.49□□□□□ -0.25
VPS28-201ENST00000292510 LMNB2Q03252 620 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms