RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CKMP06732 381 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 MYL4P12829 197 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 PSMB4P28070 264 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 TFF2Q03403 129 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 IL10RBQ08334 325 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 ZNF177Q13360 481 aaPredicted RBP17■□□□□ 0.31
CPSF4-201ENST00000292476 INSCQ1MX18 579 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 TXNDC8Q6A555 127 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 ZNF783Q6ZMS7 281 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 LINC00523Q86TU6 105 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 CRLF3Q8IUI8 442 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 NETO2Q8NC67 525 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 ATP2A3Q93084 1043 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 AGAP3Q96P47 875 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 FAM96AQ9H5X1 160 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 DCLRE1BQ9H816 532 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 PCMTD2Q9NV79 361 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 NDFIP2Q9NV92 336 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 THAP1Q9NVV9 213 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 THEGQ9P2T0 379 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 SH3BP1Q9Y3L3 701 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 CPQQ9Y646 472 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 NUMBLQ9Y6R0 609 aa17■□□□□ 0.31
CPSF4-201ENST00000292476 FCHO1O14526 889 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 ZNF197O14709 1029 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 PER2O15055 1255 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 CCL16O15467 120 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 DIAPH2O60879 1101 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 AP2A1O95782 977 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 KLKB1P03952 638 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 TPBGLP0DKB5 382 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 IRF1P10914 325 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 GCKP35557 465 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 HYAL1Q12794 435 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 ZBTB17Q13105 803 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 BMPR2Q13873 1038 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 CHI3L2Q15782 390 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 TMCO4Q5TGY1 634 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 ZNF354CQ86Y25 554 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 BBS5Q8N3I7 341 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 PDCD7Q8N8D1 485 aaKnown RBP16.99■□□□□ 0.31
CPSF4-201ENST00000292476 ZNF599Q96NL3 588 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 FCRL5Q96RD9 977 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 NUDCD1Q96RS6 583 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 MIPEPQ99797 713 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 LRRC40Q9H9A6 602 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 ZNF212Q9UDV6 495 aa16.99■□□□□ 0.31
CPSF4-201ENST00000292476 ZFP37Q9Y6Q3 630 aaPredicted RBP16.99■□□□□ 0.31
CPSF4-201ENST00000292476 GYG2O15488 501 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 CACNG3O60359 315 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 UGT1A9O60656 530 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 LUC7L3O95232 432 aaKnown RBP16.98■□□□□ 0.31
CPSF4-201ENST00000292476 ESRRAP11474 423 aaPredicted RBP16.98■□□□□ 0.31
CPSF4-201ENST00000292476 SLC6A4P31645 630 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 NRIP1P48552 1158 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 SERINC3Q13530 473 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 CRYMQ14894 314 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 SPANXN3Q5MJ09 141 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 MARC1Q5VT66 337 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 NAPEPLDQ6IQ20 393 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 PACS1Q6VY07 963 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 HTR3DQ70Z44 454 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 HS6ST3Q8IZP7 471 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 ZSCAN18Q8TBC5 510 aaPredicted RBP16.98■□□□□ 0.31
CPSF4-201ENST00000292476 SLC22A17Q8WUG5 538 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 HLA-CQ95604 372 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 ZFRQ96KR1 1074 aaKnown RBP16.98■□□□□ 0.31
CPSF4-201ENST00000292476 CYP2S1Q96SQ9 504 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 CADM1Q9BY67 442 aaKnown RBP16.98■□□□□ 0.31
CPSF4-201ENST00000292476 SLC13A1Q9BZW2 595 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 CXorf56Q9H5V9 222 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 NOL6Q9H6R4 1146 aaKnown RBP16.98■□□□□ 0.31
CPSF4-201ENST00000292476 UGT1A7Q9HAW7 530 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 UGT1A10Q9HAW8 530 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 UGT1A8Q9HAW9 530 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 RBM22Q9NW64 420 aaKnown RBP eCLIP16.98■□□□□ 0.314e-6■■■□□ 14.6
CPSF4-201ENST00000292476 SMPD4Q9NXE4 827 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 DCDC2Q9UHG0 476 aa16.98■□□□□ 0.31
CPSF4-201ENST00000292476 A0A1W2PRU2 124 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 ILVBLA1L0T0 632 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 CAPN14A8MX76 684 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 LIN7AO14910 233 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-201ENST00000292476 GSC2O15499 205 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 AVPR1AP37288 418 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 GEMP55040 296 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 CYP4F8P98187 520 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 TNK2Q07912 1038 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 STX3Q13277 289 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 MROH9Q5TGP6 573 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 RFWD3Q6PCD5 774 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 CCDC117Q8IWD4 279 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-201ENST00000292476 FAM217AQ8IXS0 508 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.97■□□□□ 0.31
CPSF4-201ENST00000292476 HJURPQ8NCD3 748 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-201ENST00000292476 PPP2R3CQ969Q6 453 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 ISL2Q96A47 359 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 HMCESQ96FZ2 354 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 CEP41Q9BYV8 373 aa16.97■□□□□ 0.31
CPSF4-201ENST00000292476 DENND2DQ9H6A0 471 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-201ENST00000292476 GLOD4Q9HC38 313 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms