RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TXNDC5Q8NBS9 432 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 IMP4Q96G21 291 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 CATSPER2Q96P56 530 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 FAM193BQ96PV7 902 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 SP110Q9HB58 689 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 CYP4F12Q9HCS2 524 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 PRDM5Q9NQX1 630 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 NDE1Q9NXR1 346 aa18.53■□□□□ 0.56
SHKBP1-201ENST00000291842 HNRNPLP14866 589 aaKnown RBP eCLIP18.52■□□□□ 0.561e-11■■■■□ 20.2
SHKBP1-201ENST00000291842 RENBPP51606 427 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 HNRNPDQ14103 355 aaKnown RBP18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 FBXL22Q6P050 247 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 UMODL1-AS1Q8N2C9 162 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 PTCD2Q8WV60 388 aaKnown RBP18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 FBXO44Q9H4M3 255 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 HCSTQ9UBK5 93 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 ABT1Q9ULW3 272 aaKnown RBP18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 ARHGAP26Q9UNA1 814 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 KCTD3Q9Y597 815 aa18.52■□□□□ 0.56
SHKBP1-201ENST00000291842 OR51F1A6NGY5 319 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 CCNT2O60583 730 aaKnown RBP18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 MMP2P08253 660 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 COL6A2P12110 1019 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 PAX3P23760 479 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 PIK3R1P27986 724 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 CRABP2P29373 138 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 SERPINH1P50454 418 aaKnown RBP18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 PRKAA1Q13131 559 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 CCNIQ14094 377 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 LRRC36Q1X8D7 754 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 FAM171A1Q5VUB5 890 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 PGM2L1Q6PCE3 622 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 SNX32Q86XE0 403 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 FBXO32Q969P5 355 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 FAM136AQ96C01 138 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 MYEOVQ96EZ4 313 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 MRPL46Q9H2W6 279 aaKnown RBP18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 POMKQ9H5K3 350 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 MRM3Q9HC36 420 aaKnown RBP18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 MTF2Q9Y483 593 aaPredicted RBP18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 PCDHB5Q9Y5E4 795 aa18.52■□□□□ 0.55
SHKBP1-201ENST00000291842 MIA3Q5JRA6 1907 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 HEATR9A2RTY3 570 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 WASH4PA8MWX3 477 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 BUD23O43709 281 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 NUDT2P50583 147 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 PLK1P53350 603 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 NFE2Q16621 373 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 CMPK2Q5EBM0 449 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 C10orf120Q5SQS8 335 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 METTL21CQ5VZV1 264 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 CCDC117Q8IWD4 279 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 PGBD5Q8N414 524 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 OR13J1Q8NGT2 312 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 OR6P1Q8NGX9 317 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 SUDS3Q9H7L9 328 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 S100A14Q9HCY8 104 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 POMPQ9Y244 141 aa18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 FNDC1Q4ZHG4 1894 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-201ENST00000291842 EOMESO95936 686 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 SLC2A3P11169 496 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 RHOQP17081 205 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 KCNA5P22460 613 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 PAX7P23759 505 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 GATMP50440 423 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 NRG1Q02297 640 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 TAF10Q12962 218 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 RASIP1Q5U651 963 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 MSANTD2Q6P1R3 559 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 TRAF7Q6Q0C0 670 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 IZUMO2Q6UXV1 221 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 RNF111Q6ZNA4 994 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 C8orf48Q96LL4 319 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 ZNF184Q99676 751 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 SEPT5Q99719 369 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 GPR62Q9BZJ7 368 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 PRKD2Q9BZL6 878 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 CRISPLD1Q9H336 500 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 GPAMQ9HCL2 828 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 IGSF5Q9NSI5 407 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 UXTQ9UBK9 157 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 SLC12A8A0AV02 714 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 INPPL1O15357 1258 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 ARSAP15289 507 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 YWHAQP27348 245 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 ARSDP51689 593 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 NDST2P52849 883 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 KLC1Q07866 573 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 PTPRCAPQ14761 206 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 SH2D4BQ5SQS7 431 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 TMCO4Q5TGY1 634 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 TRIM67Q6ZTA4 783 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 ACAD11Q709F0 780 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 LRRC49Q8IUZ0 686 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 FBXW8Q8N3Y1 598 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 SH3RF2Q8TEC5 729 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 RPRD1AQ96P16 312 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 PPP1R2P1Q96PQ5 205 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 RTKNQ9BST9 563 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 TMEM248Q9NWD8 314 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms