RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 IL12RB2Q99665 862 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 WRAP53Q9BUR4 548 aaKnown RBP12.93□□□□□ -0.34
CD44-203ENST00000278386 CATSPERBQ9H7T0 1116 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 SYNDIG1Q9H7V2 258 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 NCKIPSDQ9NZQ3 722 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 SPASTQ9UBP0 616 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 KLF15Q9UIH9 416 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 CSNK1G3Q9Y6M4 447 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 BPTFQ12830 3046 aa12.93□□□□□ -0.34
CD44-203ENST00000278386 LGALS16A8MUM7 142 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 RASA4BC9J798 803 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 MUSKO15146 869 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 RASA4O43374 803 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 MMP20O60882 483 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 PIGNO95427 931 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 CDK11BP21127 795 aaKnown RBP12.92□□□□□ -0.34
CD44-203ENST00000278386 ZNF143P52747 638 aaPredicted RBP12.92□□□□□ -0.34
CD44-203ENST00000278386 TPI1P60174 286 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 PFN3P60673 137 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 CXADRP78310 365 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 MYL5Q02045 173 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 EIF2B5Q13144 721 aaKnown RBP12.92□□□□□ -0.34
CD44-203ENST00000278386 NR0B2Q15466 257 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 KLHL40Q2TBA0 621 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 PRRT3Q5FWE3 981 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 C3orf38Q5JPI3 329 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 CFAP58Q5T655 872 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 DCUN1D2Q6PH85 259 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 SASS6Q6UVJ0 657 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 PHF13Q86YI8 300 aaPredicted RBP12.92□□□□□ -0.34
CD44-203ENST00000278386 SPACA3Q8IXA5 215 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 ZNF248Q8NDW4 579 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 ASB12Q8WXK4 309 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 GLMNQ92990 594 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 ZNF578Q96N58 590 aaPredicted RBP12.92□□□□□ -0.34
CD44-203ENST00000278386 LRRC61Q9BV99 259 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 SLC13A1Q9BZW2 595 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 TTYH3Q9C0H2 523 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 KLC2Q9H0B6 622 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 TCEAL2Q9H3H9 227 aaPredicted RBP12.92□□□□□ -0.34
CD44-203ENST00000278386 PRORYQ9H606 182 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 LMBRD1Q9NUN5 540 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 ANO10Q9NW15 660 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 RAI2Q9Y5P3 530 aa12.92□□□□□ -0.34
CD44-203ENST00000278386 SIGLEC16A6NMB1 481 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 AREL1O15033 823 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 FGF10O15520 208 aaPredicted RBP12.91□□□□□ -0.34
CD44-203ENST00000278386 PRB1P04280 392 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 ANXA6P08133 673 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 TGM2P21980 687 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 RPIAP49247 311 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 TLE3Q04726 772 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 C1QBPQ07021 282 aaKnown RBP12.91□□□□□ -0.34
CD44-203ENST00000278386 ELP6Q0PNE2 266 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 C1orf61Q13536 156 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 IRF4Q15306 451 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 TCEA2Q15560 299 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 STX1AQ16623 288 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 PARP15Q460N3 678 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 FAXCQ5TGI0 409 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 BROXQ5VW32 411 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 MACC1Q6ZN28 852 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 LSMEM2Q8N112 164 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 PAF1Q8N7H5 531 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 TP53I13Q8NBR0 393 aaPredicted RBP12.91□□□□□ -0.34
CD44-203ENST00000278386 AGPAT1Q99943 283 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 NOL6Q9H6R4 1146 aaKnown RBP12.91□□□□□ -0.34
CD44-203ENST00000278386 POLR1BQ9H9Y6 1135 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 LHX3Q9UBR4 397 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 UBA2Q9UBT2 640 aaPredicted RBP12.91□□□□□ -0.34
CD44-203ENST00000278386 LIMA1Q9UHB6 759 aaKnown RBP12.91□□□□□ -0.34
CD44-203ENST00000278386 SALL4Q9UJQ4 1053 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 FZD10Q9ULW2 581 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 DOLKQ9UPQ8 538 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 COQ6Q9Y2Z9 468 aa12.91□□□□□ -0.34
CD44-203ENST00000278386 RIOK3O14730 519 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 INSIG1O15503 277 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 ITIH2P19823 946 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 EIF4A3P38919 411 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 ANP32AP39687 249 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 AIF1P55008 147 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 ADKP55263 362 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 YBEYP58557 167 aaPredicted RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 RPL7AP62424 266 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 YPEL5P62699 121 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 PPARDQ03181 441 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 SERINC3Q13530 473 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 INO80DQ53TQ3 878 aaPredicted RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 C6orf132Q5T0Z8 1188 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 RBM44Q6ZP01 1051 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 GPR155Q7Z3F1 870 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 DNAAF5Q86Y56 855 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 KCNE4Q8WWG9 221 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 SLC39A7Q92504 469 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 CENPTQ96BT3 561 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 CNPY3Q9BT09 278 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 MBNL1Q9NR56 388 aaKnown RBP12.9□□□□□ -0.34
CD44-203ENST00000278386 THSD1Q9NS62 852 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 GPATCH2LQ9NWQ4 482 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 DKK3Q9UBP4 350 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms