RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 TRIM60Q495X7 471 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SLC44A4Q53GD3 710 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 USP39Q53GS9 565 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 NHSL2Q5HYW2 709 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 EMC10Q5UCC4 262 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CES4AQ5XG92 561 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SLC25A24Q6NUK1 477 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 UNQ6494/PRO21346Q6UXR6 183 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 G2E3Q7L622 706 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SYT13Q7L8C5 426 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ADGRE4PQ86SQ3 457 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 FAM160B2Q86V87 743 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CNTN4Q8IWV2 1026 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 RHOT2Q8IXI1 618 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 GSPT2Q8IYD1 628 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 CNTROBQ8N137 903 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 D2HGDHQ8N465 521 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 POC5Q8NA72 575 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 GLB1L3Q8NCI6 653 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.73□□□□□ -1.65
CD44-202ENST00000278385 ZCCHC10Q8TBK6 192 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 KCNE4Q8WWG9 221 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 PRPF31Q8WWY3 499 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 DNAAF4Q8WXU2 420 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 PERPQ96FX8 193 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 C8orf49Q96NF6 230 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 FAM111AQ96PZ2 611 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 TBCDQ9BTW9 1192 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 TUBB6Q9BUF5 446 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 CCDC94Q9BW85 323 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 PHF7Q9BWX1 381 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 PLA2G12BQ9BX93 195 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 MRPL46Q9H2W6 279 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 YY1AP1Q9H869 796 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 VEZTQ9HBM0 779 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ADARB2Q9NS39 739 aaKnown RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 ATAD3AQ9NVI7 634 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SRRDQ9UH36 339 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ST6GALNAC2Q9UJ37 374 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 AJAP1Q9UKB5 411 aaPredicted RBP4.73□□□□□ -1.65
CD44-202ENST00000278385 TRPV2Q9Y5S1 764 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 SLC30A1Q9Y6M5 507 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 ARFGEF1Q9Y6D6 1849 aa4.73□□□□□ -1.65
CD44-202ENST00000278385 FAM90A18PA6NE21 464 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FAM90A16PA6NEW6 464 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FAM90A9PA6NNJ1 464 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FAM90A5PA8MXJ8 464 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 POLR3GO15318 223 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 PSMD10O75832 226 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TOX4O94842 621 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 EPN2O95208 641 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 MATN4O95460 622 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 INHBAP08476 426 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 RHOXF2BP0C7M4 288 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FAM90A15PP0C7V4 464 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SUPT20HL2P0C7V6 817 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FAM90A14PP0C7W9 464 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PRR35P0CG20 571 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 VSIG10L2P0DP72 767 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 CKBP12277 381 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SELLP14151 372 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FDPSP14324 419 aaKnown RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 CPA1P15085 419 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PECAM1P16284 738 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 KLRC1P26715 233 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PRDX5P30044 214 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 GDI1P31150 447 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 KIR2DL3P43628 341 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 RBM5P52756 815 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-202ENST00000278385 ATXN3P54252 364 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 ARF5P84085 180 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 KRT17Q04695 432 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TLE1Q04724 770 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PPATQ06203 517 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SCN1BQ07699 218 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 NSUN2Q08J23 767 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-202ENST00000278385 MGAT5Q09328 741 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 KIF5AQ12840 1032 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 NPRL3Q12980 569 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 ZBTB17Q13105 803 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 RAB32Q13637 225 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PTK6Q13882 451 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TUBB2AQ13885 445 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 RCN2Q14257 317 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 GCKRQ14397 625 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 CLCA4Q14CN2 919 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PCLAFQ15004 111 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PRKD1Q15139 912 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 MED22Q15528 200 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 HFEQ30201 348 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 ATXN7L2Q5T6C5 722 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 PM20D1Q6GTS8 502 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TCTN3Q6NUS6 607 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 ZNF585AQ6P3V2 769 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TMEM154Q6P9G4 183 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 ZCCHC12Q6PEW1 402 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 ZYG11AQ6WRX3 759 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 CLEC14AQ86T13 490 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FAM90A1Q86YD7 464 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms