RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SPDYE1Q8NFV5 336 aaPredicted RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 DNAJC28Q9NX36 388 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 CORO1CQ9ULV4 474 aaPredicted RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 FAM50BQ9Y247 325 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 MATN2O00339 956 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 MTSS1O43312 755 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 DNAJA2O60884 412 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 TADA2AO75478 443 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 PGM3O95394 542 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 MRPS35P82673 323 aaKnown RBP16.78■□□□□ 0.28
VPS54-201ENST00000272322 PRKCZQ05513 592 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 PCBP1Q15365 356 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS54-201ENST00000272322 SCIMPQ6UWF3 145 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 TMEM151AQ8N4L1 468 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 RAB3IL1Q8TBN0 382 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 PIP4K2CQ8TBX8 421 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 IGSF8Q969P0 613 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 CATSPERBQ9H7T0 1116 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 ABCC13Q9NSE7 274 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 GIT1Q9Y2X7 761 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 ARL5AQ9Y689 179 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 SLC12A8A0AV02 714 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 DUSP11O75319 330 aaKnown RBP16.78■□□□□ 0.28
VPS54-201ENST00000272322 GPC4O75487 556 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 ANXA9O76027 345 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 TUSC3Q13454 348 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 FAM171A1Q5VUB5 890 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 CD300LGQ6UXG3 332 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 PAF1Q8N7H5 531 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 VCXQ9H320 206 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 TRPC7Q9HCX4 862 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 RAP2CQ9Y3L5 183 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 GOLGA4Q13439 2230 aaKnown RBP16.78■□□□□ 0.28
VPS54-201ENST00000272322 COG7P83436 770 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 GK3PQ14409 553 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 TSTD2Q5T7W7 516 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 MARC1Q5VT66 337 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 LINC00523Q86TU6 105 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 FBXW8Q8N3Y1 598 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 KIFC1Q9BW19 673 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 C1QTNF1Q9BXJ1 281 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 NACA2Q9H009 215 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 TCAF1Q9Y4C2 921 aa16.78■□□□□ 0.28
VPS54-201ENST00000272322 MAGEB16A2A368 324 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 MATN3O15232 486 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 RPL17P18621 184 aaKnown RBP16.77■□□□□ 0.28
VPS54-201ENST00000272322 CDK7P50613 346 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 TBX4P57082 545 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 CAP1Q01518 475 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 ZYG11AQ6WRX3 759 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 CLEC14AQ86T13 490 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 BHLHE22Q8NFJ8 381 aaPredicted RBP16.77■□□□□ 0.28
VPS54-201ENST00000272322 OR13C4Q8NGS5 318 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 RPL10LQ96L21 214 aaKnown RBP16.77■□□□□ 0.28
VPS54-201ENST00000272322 FAM193BQ96PV7 902 aaPredicted RBP16.77■□□□□ 0.28
VPS54-201ENST00000272322 TSC22D3Q99576 134 aa16.77■□□□□ 0.28
VPS54-201ENST00000272322 ABT1Q9ULW3 272 aaKnown RBP16.77■□□□□ 0.28
VPS54-201ENST00000272322 A0A0U1RQF3 1178 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 DPP6P42658 865 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 AGKQ53H12 422 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 PAOXQ6QHF9 649 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 KYQ8NBH2 561 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 GBP5Q96PP8 586 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 NCKIPSDQ9NZQ3 722 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.77■□□□□ 0.27
VPS54-201ENST00000272322 SLC45A1Q9Y2W3 748 aa16.77■□□□□ 0.27
VPS54-201ENST00000272322 COPG1Q9Y678 874 aaKnown RBP16.77■□□□□ 0.27
VPS54-201ENST00000272322 CCDC160A6NGH7 325 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 A6NHS1 94 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 LYNP07948 512 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 ATP6V1B1P15313 513 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 KCNQ1P51787 676 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 NRF1Q16656 503 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 FAM83EQ2M2I3 478 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 FAM171BQ6P995 826 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 IYDQ6PHW0 289 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 C17orf99Q6UX52 265 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 SERINC5Q86VE9 423 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 OR6Y1Q8NGX8 325 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 SEMA3CQ99985 751 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 DRC3Q9H069 523 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 SARS2Q9NP81 518 aaKnown RBP16.76■□□□□ 0.27
VPS54-201ENST00000272322 APPL1Q9UKG1 709 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 A0A0D9SEW6 157 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 CCNCP24863 283 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 OR1E1P30953 314 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 ARCN1P48444 511 aaKnown RBP16.76■□□□□ 0.27
VPS54-201ENST00000272322 C1QTNF8P60827 252 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 VAT1Q99536 393 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 NOL6Q9H6R4 1146 aaKnown RBP16.76■□□□□ 0.27
VPS54-201ENST00000272322 WDR41Q9HAD4 459 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 UTP6Q9NYH9 597 aaKnown RBP16.76■□□□□ 0.27
VPS54-201ENST00000272322 ERI2A8K979 691 aaKnown RBP16.76■□□□□ 0.27
VPS54-201ENST00000272322 F8W8V4 182 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 GPR39O43194 453 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 TPST1O60507 370 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 CSE1LP55060 971 aaKnown RBP16.76■□□□□ 0.27
VPS54-201ENST00000272322 ECT2LQ008S8 904 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 PLIN5Q00G26 463 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 TAF10Q12962 218 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms