RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ARSDP51689 593 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 SEMG2Q02383 582 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 CBLBQ13191 982 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 HTR3DQ70Z44 454 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 CHST9Q7L1S5 443 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 PTAR1Q7Z6K3 402 aaPredicted RBP16.66■□□□□ 0.26
USP4-201ENST00000265560 ABCB8Q9NUT2 735 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 TDP1Q9NUW8 608 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 TMEM51Q9NW97 253 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 STK39Q9UEW8 545 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 SEPT3Q9UH03 358 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 GGT7Q9UJ14 662 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 COPEO14579 308 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 PSMD3O43242 534 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 FAM107AO95990 144 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 GSTA2P09210 222 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 ATXN1LP0C7T5 689 aaKnown RBP16.66■□□□□ 0.26
USP4-201ENST00000265560 DRD4P21917 467 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 CDK18Q07002 472 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 LMAN2Q12907 356 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 RASA2Q15283 850 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 CCNJLQ8IV13 435 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 OTUD6BQ8N6M0 293 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 OR6P1Q8NGX9 317 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 LRRC3BQ96PB8 259 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 PSKH2Q96QS6 385 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 PPCSQ9HAB8 311 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 STOML2Q9UJZ1 356 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 MAFFQ9ULX9 164 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 GABRB3P28472 473 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 VIPR2P41587 438 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZNF789Q5FWF6 425 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 TRIM68Q6AZZ1 485 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 FSTL4Q6MZW2 842 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 MARK2Q7KZI7 788 aaKnown RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 ARMC2Q8NEN0 867 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 CKAP2Q8WWK9 683 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 CENPTQ96BT3 561 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZNF707Q96C28 371 aaPredicted RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 SCUBE2Q9NQ36 999 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 INTS6Q9UL03 887 aaKnown RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 MRPS23Q9Y3D9 190 aaKnown RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 ATG2BQ96BY7 2078 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 A8MX80 341 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 C5orf67F2Z3F1 127 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 PRPF4O43172 522 aaKnown RBP eCLIP16.65■□□□□ 0.26
USP4-201ENST00000265560 ZMPSTE24O75844 475 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 PRSS56P0CW18 603 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZNF460Q14592 562 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ACBD5Q5T8D3 534 aaPredicted RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 LGSNQ5TDP6 509 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ASTLQ6HA08 431 aaPredicted RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 DCLK2Q8N568 766 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZFYVE19Q96K21 471 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 VPS11Q9H270 941 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 SENP1Q9P0U3 644 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 MTA1Q13330 715 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZNF470Q6ECI4 717 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 SPATA6LQ8N4H0 392 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 EFHBQ8N7U6 833 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 LPCAT1Q8NF37 534 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 VN1R2Q8NFZ6 395 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 OR13C4Q8NGS5 318 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 SMG7Q92540 1137 aaKnown RBP16.65■□□□□ 0.26
USP4-201ENST00000265560 PTPRN2Q92932 1015 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 FAM136AQ96C01 138 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ALG14Q96F25 216 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZNF180Q9UJW8 692 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 OR51B4Q9Y5P0 310 aa16.65■□□□□ 0.26
USP4-201ENST00000265560 ZNF189O75820 626 aaPredicted RBP16.64■□□□□ 0.25
USP4-201ENST00000265560 NEFHP12036 1026 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 TYK2P29597 1187 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 HLA-FP30511 346 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 RHOAP61586 193 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 PPP2R2DQ66LE6 453 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 KLHDC8BQ8IXV7 354 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 PAF1Q8N7H5 531 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 ERLEC1Q96DZ1 483 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 MGME1Q9BQP7 344 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 BBS2Q9BXC9 721 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 IQCGQ9H095 443 aaKnown RBP16.64■□□□□ 0.25
USP4-201ENST00000265560 TASP1Q9H6P5 420 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 VPS45Q9NRW7 570 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 SLC39A10Q9ULF5 831 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 SMG5Q9UPR3 1016 aaKnown RBP16.64■□□□□ 0.25
USP4-201ENST00000265560 SPO11Q9Y5K1 396 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 MAGEB16A2A368 324 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 AHSGP02765 367 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 TAC1P20366 129 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 IL9RQ01113 521 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 MSLNQ13421 630 aaPredicted RBP16.64■□□□□ 0.25
USP4-201ENST00000265560 HDAC10Q969S8 669 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 APOPT1Q96IL0 206 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 ACSS2Q9NR19 701 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 FBXO6Q9NRD1 293 aaPredicted RBP16.64■□□□□ 0.25
USP4-201ENST00000265560 RWDD3Q9Y3V2 267 aa16.64■□□□□ 0.25
USP4-201ENST00000265560 GFRA2O00451 464 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 PHGDHO43175 533 aaKnown RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 GP5P40197 560 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 ARCN1P48444 511 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms