RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	ARFGAP1	Q8N6T3	406 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	CPLX3	Q8WVH0	158 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	HNRNPLL	Q8WVV9	542 aa	Known RBP	10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	VOPP1	Q96AW1	172 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	PEBP4	Q96S96	227 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	TTYH3	Q9C0H2	523 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	CATSPERB	Q9H7T0	1116 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	KLHL11	Q9NVR0	708 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	IPO11	Q9UI26	975 aa	Known RBP	10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	AP4E1	Q9UPM8	1137 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	LAMA5	O15230	3695 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	PLXNB3	Q9ULL4	1909 aa		10.44	□□□□□ -0.74
SCN1A-222	ENST00000642141	PTPRB	P23467	1997 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TP53BP1	Q12888	1972 aa	Predicted RBP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141		A0A1B0GTH6	734 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TMEM191C	A6NGB0	347 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141		A6NNZ2	444 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	SPINT1	O43278	529 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TSPAN6	O43657	245 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	RFPL3	O75679	317 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	GSR	P00390	522 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	PRKCG	P05129	697 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TIMP2	P16035	220 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	CKMT2	P17540	419 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	DES	P17661	470 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	PAPOLA	P51003	745 aa	Known RBP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	FZD2	Q14332	565 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	NR1I3	Q14994	352 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	IQCB1	Q15051	598 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	SMAD1	Q15797	465 aa	Known RBP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	HES3	Q5TGS1	186 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	PLEKHA7	Q6IQ23	1121 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	KIAA1161	Q6NSJ0	714 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	ABI3BP	Q7Z7G0	1075 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	PROSER1	Q86XN7	944 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TP53INP2	Q8IXH6	220 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TSC1	Q92574	1164 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	ZNF653	Q96CK0	615 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	GDAP1L1	Q96MZ0	367 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	KCTD15	Q96SI1	283 aa	Predicted RBP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	NCAPG	Q9BPX3	1015 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	SLC39A8	Q9C0K1	460 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	RETREG1	Q9H6L5	497 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	CBX8	Q9HC52	389 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	CNOT8	Q9UFF9	292 aa	Known RBP	10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	KLF15	Q9UIH9	416 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	COQ6	Q9Y2Z9	468 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	MFHAS1	Q9Y4C4	1052 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	ITPR1	Q14643	2758 aa		10.43	□□□□□ -0.74
SCN1A-222	ENST00000642141	TTC24	A2A3L6	582 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	DFFA	O00273	331 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	EEF2K	O00418	725 aa	Known RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	FPGT	O14772	594 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	SCAMP1	O15126	338 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	AP1G1	O43747	822 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	PRPSAP2	O60256	369 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	BUB1B	O60566	1050 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	PIAS2	O75928	621 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	IGSF6	O95976	241 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	TCF4	P15884	667 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	XPA	P23025	273 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	MIP	P30301	263 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	YBEY	P58557	167 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	DAB2	P98082	770 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	CAMK2B	Q13554	666 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	PDE1C	Q14123	709 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	PROX2	Q3B8N5	592 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	PARP15	Q460N3	678 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	ERMARD	Q5T6L9	678 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	ARHGAP36	Q6ZRI8	547 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	CAMK1D	Q8IU85	385 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	PLPP6	Q8IY26	295 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	UMODL1-AS1	Q8N2C9	162 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	VCPIP1	Q96JH7	1222 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	BTBD6	Q96KE9	485 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	KLF6	Q99612	283 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	FUCA2	Q9BTY2	467 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	SNRNP25	Q9BV90	132 aa	Known RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	C1QTNF2	Q9BXJ5	285 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	OSBPL1A	Q9BXW6	950 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	TCEAL2	Q9H3H9	227 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	ZWILCH	Q9H900	591 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	MBNL1	Q9NR56	388 aa	Known RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	AIPL1	Q9NZN9	384 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	LHX3	Q9UBR4	397 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	UBA2	Q9UBT2	640 aa	Predicted RBP	10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	MYO6	Q9UM54	1294 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	LHX6	Q9UPM6	363 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	HS3ST3A1	Q9Y663	406 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	CELSR3	Q9NYQ7	3312 aa		10.42	□□□□□ -0.74
SCN1A-222	ENST00000642141	SPTY2D1-AS1	A0A0U1RR47	76 aa		10.41	□□□□□ -0.74
SCN1A-222	ENST00000642141	WASH4P	A8MWX3	477 aa		10.41	□□□□□ -0.74
SCN1A-222	ENST00000642141		A8MX80	341 aa		10.41	□□□□□ -0.74
SCN1A-222	ENST00000642141	AREL1	O15033	823 aa		10.41	□□□□□ -0.74
SCN1A-222	ENST00000642141	FGF10	O15520	208 aa	Predicted RBP	10.41	□□□□□ -0.74
SCN1A-222	ENST00000642141	RNF8	O76064	485 aa		10.41	□□□□□ -0.74
SCN1A-222	ENST00000642141	ERCC2	P18074	760 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms