RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ARFIP1P53367 373 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 HSPA14Q0VDF9 509 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 FSTL1Q12841 308 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 C2CD6Q53TS8 623 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 DAW1Q8N136 415 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ANKFN1Q8N957 763 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 BDH2Q9BUT1 245 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 FAM192AQ9GZU8 254 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TBC1D23Q9NUY8 699 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 AMACRQ9UHK6 382 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 MGAT4AQ9UM21 535 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 A0A087X0B3 334 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SSU72P8A0A1W2PR75 194 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM64BA6NI03 449 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ITGAVP06756 1048 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 HNRNPCP07910 306 aaKnown RBP eCLIP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 PFKMP08237 780 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SPATA31D3P0C874 917 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ITGA2P17301 1181 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CDH5P33151 784 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 BUD31P41223 144 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ABL2P42684 1182 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CRATP43155 626 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SCNN1GP51170 649 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GAD2Q05329 585 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ACAP1Q15027 740 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 FAM110CQ1W6H9 321 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 XKR6Q5GH73 641 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SAMD4BQ5PRF9 694 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ZCCHC12Q6PEW1 402 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 RTL4Q6ZR62 310 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SPATA31D4Q6ZUB0 917 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 C17orf64Q86WR6 236 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 FAM13CQ8NE31 585 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 METTL6Q8TCB7 284 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 Q96MT0 163 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ST3GAL5Q9UNP4 418 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SEPT4O43236 478 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 PDHA1P08559 390 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ELNP15502 786 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SYN2Q92777 582 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 LMLNQ96KR4 655 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 NDC1Q9BTX1 674 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM120AQ9BXJ8 343 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ROPN1BQ9BZX4 212 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ROPN1Q9HAT0 212 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CFAP97Q9P2B7 532 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CPED1A4D0V7 1026 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 STX16-NPEPL1H3BU86 382 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 FCHO1O14526 889 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 STX16O14662 325 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GATBO75879 557 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 BAIAP3O94812 1187 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 INHAP05111 366 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 HNF1BP35680 557 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SERPINB5P36952 375 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GLRBP48167 497 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 RHBDL3P58872 404 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 STXBP1P61764 594 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SMAD3P84022 425 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 MYBPC2Q14324 1141 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 THOC7Q6I9Y2 204 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CHRDL2Q6WN34 429 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CTU1Q7Z7A3 348 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CD101Q93033 1021 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 NKD1Q969G9 470 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 EFHD2Q96C19 240 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 HAVCR1Q96D42 359 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TBCBQ99426 244 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 PCBD2Q9H0N5 130 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 MAT2BQ9NZL9 334 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 FBXO2Q9UK22 296 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 BTBD3Q9Y2F9 522 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 DNAJC16Q9Y2G8 782 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GSTK1Q9Y2Q3 226 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 KCNE2Q9Y6J6 123 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TNS2Q63HR2 1409 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 HYKKA2RU49 373 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 PPP1R3GB7ZBB8 358 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CASKO14936 926 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CHP2O43745 196 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ATP9AO75110 1047 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ATG7O95352 703 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 S100A3P33764 101 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 MYL6P60660 151 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 RASGEF1BQ0VAM2 473 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 LIN54Q6MZP7 749 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 IL27RAQ6UWB1 636 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SMIM5Q71RC9 77 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 RAVER1Q8IY67 606 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CKAP2Q8WWK9 683 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 RBM18Q96H35 190 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SATB2Q9UPW6 733 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TBC1D30Q9Y2I9 924 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 DIP2BQ9P265 1576 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TCHHL1Q5QJ38 904 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 STRADAQ7RTN6 431 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 NUP54Q7Z3B4 507 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 NANOGNBQ7Z5D8 188 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 HID1Q8IV36 788 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms