RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 KRIT1O00522 736 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 RIOK3O14730 519 aaKnown RBP19.71■□□□□ 0.75
CLN3-262ENST00000637699 TCEA3O75764 348 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 MTIF2P46199 727 aaKnown RBP19.71■□□□□ 0.75
CLN3-262ENST00000637699 PTK2BQ14289 1009 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 ZSCAN23Q3MJ62 389 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 ZNF805Q5CZA5 627 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 TRNP1Q6NT89 227 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 CCDC81Q6ZN84 652 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 XYLT1Q86Y38 959 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 PHACTR4Q8IZ21 702 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 WDR36Q8NI36 951 aaKnown RBP19.71■□□□□ 0.75
CLN3-262ENST00000637699 ASB12Q8WXK4 309 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 RAB7BQ96AH8 199 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 MED8Q96G25 268 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 CFAP57Q96MR6 1250 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 RWDD2AQ9UIY3 292 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 PNMA8BQ9ULN7 279 aaPredicted RBP19.71■□□□□ 0.75
CLN3-262ENST00000637699 UGT2B4P06133 528 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 ANXA6P08133 673 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 GABRB2P47870 512 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 BPIFB4P59827 614 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 CLN3Q13286 438 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 LRRC73Q5JTD7 316 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 C6orf132Q5T0Z8 1188 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 FAXCQ5TGI0 409 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 LEKR1Q6ZMV7 388 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 VPS36Q86VN1 386 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 IRF2BP1Q8IU81 584 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 FAM71AQ8IYT1 594 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 DENND6BQ8NEG7 585 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 NAT6Q93015 286 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 ISG20Q96AZ6 181 aaKnown RBP19.7■□□□□ 0.74
CLN3-262ENST00000637699 CENPTQ96BT3 561 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 CCDC3Q9BQI4 270 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 LRRC61Q9BV99 259 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 SLC13A1Q9BZW2 595 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 TMEM51Q9NW97 253 aa19.7■□□□□ 0.74
CLN3-262ENST00000637699 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.7■□□□□ 0.74
CLN3-262ENST00000637699 MAST4O15021 2626 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 CCDC187A0A096LP49 1063 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 LMO7DNF2Z398 122 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 YY2O15391 372 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 GADD45BO75293 160 aaPredicted RBP19.69■□□□□ 0.74
CLN3-262ENST00000637699 CDH5P33151 784 aaPredicted RBP19.69■□□□□ 0.74
CLN3-262ENST00000637699 IGFALSP35858 605 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 SCNN1AP37088 669 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 SPIDRQ14159 915 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 TAF3Q5VWG9 929 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 PLPP6Q8IY26 295 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 KLHL32Q96NJ5 620 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 CLPBQ9H078 707 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 NDFIP2Q9NV92 336 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 PPARGC1AQ9UBK2 798 aaKnown RBP19.69■□□□□ 0.74
CLN3-262ENST00000637699 GULP1Q9UBP9 304 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 DNAI1Q9UI46 699 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 PADI4Q9UM07 663 aa19.69■□□□□ 0.74
CLN3-262ENST00000637699 SLC28A2O43868 658 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 MMP20O60882 483 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 CYP11B1P15538 503 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 TSHRP16473 764 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 PDX1P52945 283 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 ATP11AP98196 1134 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 POLD3Q15054 466 aaPredicted RBP19.68■□□□□ 0.74
CLN3-262ENST00000637699 MYLK3Q32MK0 819 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 RWDD4Q6NW29 188 aaKnown RBP19.68■□□□□ 0.74
CLN3-262ENST00000637699 ESRP1Q6NXG1 681 aaKnown RBP19.68■□□□□ 0.74
CLN3-262ENST00000637699 CLEC14AQ86T13 490 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 TTC7BQ86TV6 843 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 OR2AP1Q8NGE2 309 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 WDR48Q8TAF3 677 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 ARHGEF26Q96DR7 871 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 CLMPQ9H6B4 373 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 TMEM59LQ9UK28 342 aa19.68■□□□□ 0.74
CLN3-262ENST00000637699 CYSRT1A8MQ03 144 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 AREL1O15033 823 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 POP4O95707 220 aaKnown RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 CELA2BP08218 269 aaPredicted RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 ITIH2P19823 946 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 ETFBP38117 255 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 EIF4A3P38919 411 aaKnown RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 SNRPD1P62314 119 aaKnown RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 YPEL5P62699 121 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 PPARDQ03181 441 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 KCNC4Q03721 635 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 C1QBPQ07021 282 aaKnown RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 RAPGEF1Q13905 1077 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 TCEA2Q15560 299 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 RAB6CQ53S08 254 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 ATXN7L2Q5T6C5 722 aaPredicted RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 SMYD5Q6GMV2 418 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 BNIPLQ7Z465 357 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 EMC1Q8N766 993 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 ARHGEF2Q92974 986 aaKnown RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 VOPP1Q96AW1 172 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 CCNL2Q96S94 520 aaPredicted RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 RAB6CQ9H0N0 254 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 MBNL1Q9NR56 388 aaKnown RBP19.67■□□□□ 0.74
CLN3-262ENST00000637699 SIRPGQ9P1W8 387 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 OR12D3Q9UGF7 316 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms