RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 J3KR12 359 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 KPNA3O00505 521 aaPredicted RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 KHNYNO15037 678 aaKnown RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 RNGTTO60942 597 aaKnown RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 ZRANB2O95218 330 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-259ENST00000637551 PEX11BO96011 259 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 KRT1P04264 644 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 CTNNA2P26232 953 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 SPEM2Q0P670 501 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 CNTN1Q12860 1018 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 LBRQ14739 615 aaKnown RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 CYTH1Q15438 398 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 TFDP3Q5H9I0 405 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 DCAF12L1Q5VU92 463 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 BRAT1Q6PJG6 821 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 CACUL1Q86Y37 369 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 TEX26Q8N6G2 289 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 CHST14Q8NCH0 376 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 C1orf216Q8TAB5 229 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 FAM174AQ8TBP5 190 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 MAML1Q92585 1016 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 MGME1Q9BQP7 344 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 NUSAP1Q9BXS6 441 aaKnown RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 MAK16Q9BXY0 300 aaKnown RBP18.53■□□□□ 0.56
CLN3-259ENST00000637551 TM6SF2Q9BZW4 377 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 SALL4Q9UJQ4 1053 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 PCDHA3Q9Y5H8 950 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 PCDH15Q96QU1 1955 aa18.53■□□□□ 0.56
CLN3-259ENST00000637551 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.52■□□□□ 0.56
CLN3-259ENST00000637551 APOL1O14791 398 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 MFSD11O43934 449 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 TGM2P21980 687 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 ITPKAP23677 461 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 GJC1P36383 396 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 CDKN2BP42772 138 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 GRIA4P48058 902 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 DNA2P51530 1060 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 OVGP1Q12889 678 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 MMRN1Q13201 1228 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 PDK1Q15118 436 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 ARSIQ5FYB1 569 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 KIAA1161Q6NSJ0 714 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 NCEH1Q6PIU2 408 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 CPNE8Q86YQ8 564 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 PLD5Q8N7P1 536 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 C12orf50Q8NA57 414 aaPredicted RBP18.52■□□□□ 0.56
CLN3-259ENST00000637551 OR14C36Q8NHC7 312 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 GRIN3AQ8TCU5 1115 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 NETO1Q8TDF5 533 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 ASB12Q8WXK4 309 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 VOPP1Q96AW1 172 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 ZDHHC6Q9H6R6 413 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 ATP13A3Q9H7F0 1226 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 CAPN10Q9HC96 672 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 PARD6AQ9NPB6 346 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 SLC6A14Q9UN76 642 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 ANKRD36A6QL64 1941 aa18.52■□□□□ 0.56
CLN3-259ENST00000637551 TRPM6Q9BX84 2022 aa18.52■□□□□ 0.55
CLN3-259ENST00000637551 A0A1W2PPC4 97 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 KRIT1O00522 736 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 PPP1R12AO14974 1030 aaPredicted RBP18.51■□□□□ 0.55
CLN3-259ENST00000637551 MATN3O15232 486 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 TSPAN6O43657 245 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 BNIP3LO60238 219 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 SOCS5O75159 536 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 IGHV4-34P06331 123 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 CCDC175P0C221 793 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 ADRB3P13945 408 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 SERPINA4P29622 427 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 CETN2P41208 172 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 NUMBP49757 651 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 AFF3P51826 1226 aaKnown RBP18.51■□□□□ 0.55
CLN3-259ENST00000637551 RACK1P63244 317 aaKnown RBP18.51■□□□□ 0.55
CLN3-259ENST00000637551 PPIDQ08752 370 aaKnown RBP18.51■□□□□ 0.55
CLN3-259ENST00000637551 ZNF235Q14590 738 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 MARC1Q5VT66 337 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 GDPD4Q6W3E5 623 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 FAM124AQ86V42 546 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 PIGKQ92643 395 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 BIRC7Q96CA5 298 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 ERLEC1Q96DZ1 483 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 OLFM3Q96PB7 478 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 C6orf106Q9H6K1 298 aaPredicted RBP18.51■□□□□ 0.55
CLN3-259ENST00000637551 DTLQ9NZJ0 730 aa18.51■□□□□ 0.55
CLN3-259ENST00000637551 BCAT2O15382 392 aaPredicted RBP18.5■□□□□ 0.55
CLN3-259ENST00000637551 MTSS1O43312 755 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 SYPP08247 313 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 CR2P20023 1033 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 NFKBIAP25963 317 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 NAP1L1P55209 391 aaKnown RBP18.5■□□□□ 0.55
CLN3-259ENST00000637551 SETMARQ53H47 684 aaPredicted RBP18.5■□□□□ 0.55
CLN3-259ENST00000637551 FBXL19Q6PCT2 694 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.5■□□□□ 0.55
CLN3-259ENST00000637551 IQCHQ86VS3 1027 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 ARRDC3Q96B67 414 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 SKA1Q96BD8 255 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 ECHDC3Q96DC8 303 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 NUDCD1Q96RS6 583 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 ACTL7AQ9Y615 435 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms