RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 C4orf33Q8N1A6 199 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 PPHLN1Q8NEY8 458 aaKnown RBP17.06■□□□□ 0.32
CLN3-252ENST00000636907 MRPL38Q96DV4 380 aaKnown RBP17.06■□□□□ 0.32
CLN3-252ENST00000636907 LMLNQ96KR4 655 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 CDCA3Q99618 268 aaPredicted RBP17.06■□□□□ 0.32
CLN3-252ENST00000636907 KCNK9Q9NPC2 374 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.06■□□□□ 0.32
CLN3-252ENST00000636907 TCAF1Q9Y4C2 921 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 LAMA3Q16787 3333 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 CDK18Q07002 472 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 MSLNQ13421 630 aaPredicted RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 SLC14A2Q15849 920 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 PLEKHG6Q3KR16 790 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 RARS2Q5T160 578 aaKnown RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 ZNF449Q6P9G9 518 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 PTCD2Q8WV60 388 aaKnown RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 IRF7Q92985 503 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 IFT43Q96FT9 208 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 FEM1CQ96JP0 617 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 C2orf49Q9BVC5 232 aaPredicted RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 MRM3Q9HC36 420 aaKnown RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 SCUBE2Q9NQ36 999 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 DZANK1Q9NVP4 752 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 TBC1D14Q9P2M4 693 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 LHX3Q9UBR4 397 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 INTS6Q9UL03 887 aaKnown RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 FCF1Q9Y324 198 aaKnown RBP17.05■□□□□ 0.32
CLN3-252ENST00000636907 WNT6Q9Y6F9 365 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 C2orf16Q68DN1 1984 aa17.05■□□□□ 0.32
CLN3-252ENST00000636907 CDH23Q9H251 3354 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 A6NNZ2 444 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 NEDD8-MDP1E9PL57 170 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 SPAG7O75391 227 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 MT-CO1P00395 513 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 PENKP01210 267 aaPredicted RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 ADRA1DP25100 572 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 NAB1Q13506 487 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 TUBB8Q3ZCM7 444 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 ACDQ96AP0 544 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 LRRC3BQ96PB8 259 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 NUDCD1Q96RS6 583 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 TRIB3Q96RU7 358 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 SMC6Q96SB8 1091 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 APOL5Q9BWW9 433 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 SPHK2Q9NRA0 654 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 ZFATQ9P243 1243 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 PRKAG3Q9UGI9 489 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 PSAT1Q9Y617 370 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 NUP210Q8TEM1 1887 aaPredicted RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 TRIM49D1C9J1S8 452 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 K7ERQ8 282 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 KRT37O76014 449 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 GLP2RO95838 553 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 EPOP01588 193 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 SNRPAP09012 282 aaKnown RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 KRT4P19013 534 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 HLA-DPA1P20036 260 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 CES1P23141 567 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 HLA-FP30511 346 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 BMPR2Q13873 1038 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 SEPT6Q14141 434 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 GALNT3Q14435 633 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 ASTLQ6HA08 431 aaPredicted RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 RETSATQ6NUM9 610 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 PACS1Q6VY07 963 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 KCNMB4Q86W47 210 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 CELF5Q8N6W0 485 aaKnown RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 ANKRD42Q8N9B4 389 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 TIFAQ96CG3 184 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 RSPRY1Q96DX4 576 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 SERAC1Q96JX3 654 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 RANBP9Q96S59 729 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 KLF6Q99612 283 aaPredicted RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 BBS2Q9BXC9 721 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 C20orf96Q9NUD7 363 aaPredicted RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 ABCB8Q9NUT2 735 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 INTS9Q9NV88 658 aaKnown RBP17.04■□□□□ 0.32
CLN3-252ENST00000636907 CDH22Q9UJ99 828 aa17.04■□□□□ 0.32
CLN3-252ENST00000636907 HMX2A2RU54 273 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 KRT38O76015 456 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 MT-ND3P03897 115 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 FGF1P05230 155 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 WEE1P30291 646 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 LSP1P33241 339 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 SERPINB9P50453 376 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 PLK1P53350 603 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 RHOAP61586 193 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 HSP90AA5PQ58FG0 334 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 PITRM1Q5JRX3 1037 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 LY6G5CQ5SRR4 150 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 TEDDM1Q5T9Z0 273 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 LGSNQ5TDP6 509 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 ESRP1Q6NXG1 681 aaKnown RBP17.03■□□□□ 0.32
CLN3-252ENST00000636907 NPAS3Q8IXF0 933 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 TDHQ8IZJ6 230 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 ADGRG2Q8IZP9 1017 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 MGARPQ8TDB4 240 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 ATXN2LQ8WWM7 1075 aaKnown RBP17.03■□□□□ 0.32
CLN3-252ENST00000636907 PPP2R3CQ969Q6 453 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 CENPTQ96BT3 561 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms