RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PAF1Q8N7H5 531 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 HTR3CQ8WXA8 447 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 NUDCD1Q96RS6 583 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 IL12RB2Q99665 862 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 NAPGQ99747 312 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 FAM118BQ9BPY3 351 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 FRMD8P1Q9BZ68 369 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 FZD4Q9ULV1 537 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 ZKSCAN5Q9Y2L8 839 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 R4GN57 208 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 IGHV1OR15-9A0A0B4J2B8 117 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 TCRBV7S2A1N4TA0A589 114 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 CTAGE9A4FU28 777 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 INSIG1O15503 277 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 LILRB5O75023 590 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 NDUFS2O75306 463 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 STK10O94804 968 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 ITGB7P26010 798 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 SERPINA4P29622 427 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 MAXP61244 160 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 BCL2L1Q07817 233 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 ZBTB17Q13105 803 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 LONRF2Q1L5Z9 754 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 ZNF805Q5CZA5 627 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 CFAP58Q5T655 872 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 ADAT2Q7Z6V5 191 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 AADATQ8N5Z0 425 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 WDR24Q96S15 920 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 OSBPL9Q96SU4 736 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 NAP1L3Q99457 506 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 VAT1Q99536 393 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 BTBD1Q9H0C5 482 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 SGK2Q9HBY8 427 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 CD93Q9NPY3 652 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 SNX12Q9UMY4 172 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 ABCA7Q8IZY2 2146 aa19.34■□□□□ 0.69
SQSTM1-216ENST00000626660 THADAQ6YHU6 1953 aa19.33■□□□□ 0.69
SQSTM1-216ENST00000626660 HRO43593 1189 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 HLA-DQB2P05538 268 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 TCP1P17987 556 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 CR2P20023 1033 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 CNTN1Q12860 1018 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 SRSF5Q13243 272 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 SIM2Q14190 667 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 TEX44Q53QW1 395 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 NCEH1Q6PIU2 408 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 FAM160A2Q8N612 972 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 ARRDC3Q96B67 414 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 TOE1Q96GM8 510 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 ZNF419Q96HQ0 510 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 ZNF641Q96N77 438 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 KLHL32Q96NJ5 620 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 SEMA3CQ99985 751 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 HDAC8Q9BY41 377 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 FAM86C1Q9NVL1 165 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 R3HDM2Q9Y2K5 976 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 ATP8A1Q9Y2Q0 1164 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 SDK1Q7Z5N4 2213 aa19.33■□□□□ 0.68
SQSTM1-216ENST00000626660 BCLAF3A2AJT9 711 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 RNF103O00237 685 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 CES2O00748 559 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 SLC7A4O43246 635 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 PIGNO95427 931 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 PTPN3P26045 913 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 RBL1P28749 1068 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 DRD3P35462 400 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 NEK3P51956 506 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 METAP1P53582 386 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 ELF2Q15723 593 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 ALG1LQ6GMV1 187 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 FBXL19Q6PCT2 694 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 PRR23BQ6ZRT6 265 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 ERN2Q76MJ5 926 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 RASGEF1CQ8N431 466 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 AGAP3Q96P47 875 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 CEP41Q9BYV8 373 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 NEUROG2Q9H2A3 272 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 SUV39H2Q9H5I1 410 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 NOD2Q9HC29 1040 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 WSB2Q9NYS7 404 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 KLHL8Q9P2G9 620 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 DKK3Q9UBP4 350 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 SERGEFQ9UGK8 458 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 TRHDEQ9UKU6 1024 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 RAB23Q9ULC3 237 aa19.32■□□□□ 0.68
SQSTM1-216ENST00000626660 CEP192Q8TEP8 1941 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 TTC24A2A3L6 582 aaPredicted RBP19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 CFAP69A5D8W1 941 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 C16orf96A6NNT2 1141 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 PGRMC1O00264 195 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 PLK4O00444 970 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 KCNN4O15554 427 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 SOCS5O75159 536 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 SERPINF2P08697 491 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 CA4P22748 312 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 XPAP23025 273 aaPredicted RBP19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 ETF1P62495 437 aaKnown RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms