RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HPS1Q92902 700 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SLC45A3Q96JT2 553 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 TSNARE1Q96NA8 513 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 CPXM1Q96SM3 734 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 DNAI2Q9GZS0 605 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 KLHL25Q9H0H3 589 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 POLR3FQ9H1D9 316 aaPredicted RBP10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SMARCAD1Q9H4L7 1026 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 NANOGQ9H9S0 305 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 MTMR10Q9NXD2 777 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SLC17A6Q9P2U8 582 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 IFT52Q9Y366 437 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 TCAF1Q9Y4C2 921 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 RLFQ13129 1914 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 RNF103-CHMP3A0A140T963 221 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CABYRO75952 493 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CHRNGP07510 517 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 IL10P22301 178 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 RPL10P27635 214 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 HOXD10P28358 340 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 EEF1DP29692 281 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CAPGP40121 348 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 NR2C2P49116 596 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 KPNA1P52294 538 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 NEDD8Q15843 81 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 DGKDQ16760 1214 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ARL13AQ5H913 290 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CCNYL2Q5T2Q4 361 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 TMTC4Q5T4D3 741 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 C6orf183Q5T699 404 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 FAM102AQ5T9C2 384 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 TMEM198Q66K66 360 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 LRRC8EQ6NSJ5 796 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF773Q6PK81 442 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ZYG11AQ6WRX3 759 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 HACD2Q6Y1H2 254 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 NEK10Q6ZWH5 1172 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CYP4V2Q6ZWL3 525 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CMC1Q7Z7K0 106 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 DPP9Q86TI2 863 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CCDC60Q8IWA6 550 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 SLC7A5P1Q8MH63 180 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CADM3Q8N126 398 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PCDH20Q8N6Y1 951 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ANKRD52Q8NB46 1076 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 IL31RAQ8NI17 732 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ADAM32Q8TC27 787 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CERS2Q96G23 380 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 MTG1Q9BT17 334 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 NAA50Q9GZZ1 169 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 MOV10Q9HCE1 1003 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PDLIM7Q9NR12 457 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CCM2LQ9NUG4 571 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF358Q9NW07 568 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CACNA2D2Q9NY47 1150 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ANKMY1Q9P2S6 941 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CD300AQ9UGN4 299 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PCDHA10Q9Y5I2 948 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PRORSD1PA6NEY8 169 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 SAC3D1A6NKF1 404 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 AQP12BA6NM10 295 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 DLGAP1O14490 977 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 SEC14L2O76054 403 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 SEC24DO94855 1032 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CCNE2O96020 404 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 FCGR1AP12314 374 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 POLR2EP19388 210 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 HADHAP40939 763 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 GRIA4P48058 902 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 SOX10P56693 466 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 MYL6P60660 151 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 LRP8Q14114 963 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 SNX17Q15036 470 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 KIZQ2M2Z5 673 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 HEATR6Q6AI08 1181 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 FAM45BPQ6NSW5 357 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 AQP12AQ8IXF9 295 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 DHRSXQ8N5I4 330 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 FAM45AQ8TCE6 357 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CYGBQ8WWM9 190 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ZUFSPQ96AP4 578 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 MAELQ96JY0 434 aaKnown RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PPP1R36Q96LQ0 422 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 QKIQ96PU8 341 aaKnown RBP eCLIP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 FTHL17Q9BXU8 183 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ACE2Q9BYF1 805 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-212ENST00000619079 RMND5AQ9H871 391 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 TJP2Q9UDY2 1190 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 CYTH4Q9UIA0 394 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ATP11BQ9Y2G3 1177 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 ANKRD6Q9Y2G4 727 aa10.93□□□□□ -0.66
UPF3A-212ENST00000619079 PARP14Q460N5 1801 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 KCNU1A8MYU2 1149 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 TIMM44O43615 452 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SRP72O76094 671 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 RASAL1O95294 804 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 PGK2P07205 417 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 MBL2P11226 248 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 IL4RP24394 825 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms