RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 OLFM3Q96PB7 478 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 QKIQ96PU8 341 aaKnown RBP eCLIP10.24□□□□□ -0.771e-8■□□□□ 10.8
UPF1-213ENST00000601981 FERMT1Q9BQL6 677 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 FAM126AQ9BYI3 521 aaPredicted RBP10.24□□□□□ -0.77
UPF1-213ENST00000601981 SLC39A8Q9C0K1 460 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 BRD8Q9H0E9 1235 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 IRF2BPLQ9H1B7 796 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 KCNH6Q9H252 994 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 TMEM245Q9H330 911 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 PABPC3Q9H361 631 aaKnown RBP10.24□□□□□ -0.77
UPF1-213ENST00000601981 PRMT8Q9NR22 394 aaPredicted RBP10.24□□□□□ -0.77
UPF1-213ENST00000601981 BCCIPQ9P287 314 aaKnown RBP eCLIP10.24□□□□□ -0.77
UPF1-213ENST00000601981 UBA2Q9UBT2 640 aaPredicted RBP10.24□□□□□ -0.77
UPF1-213ENST00000601981 IPO11Q9UI26 975 aaKnown RBP10.24□□□□□ -0.77
UPF1-213ENST00000601981 FBXO4Q9UKT5 387 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 TPX2Q9ULW0 747 aaKnown RBP10.24□□□□□ -0.77
UPF1-213ENST00000601981 PLAAQ9Y263 795 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 ATP8A1Q9Y2Q0 1164 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 HEY1Q9Y5J3 304 aa10.24□□□□□ -0.77
UPF1-213ENST00000601981 PLXND1Q9Y4D7 1925 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 TCRBV21S2A2A0A5A6 115 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 GOLGA8KD6RF30 607 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ALOX15BO15296 676 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 GALR2O43603 387 aaPredicted RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 ATP9BO43861 1147 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 MFSD11O43934 449 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PRAMEF11O60813 436 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 SYF2O95926 243 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 NUDT17P0C025 328 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ZSCAN5DPP0CG00 497 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 SRCP12931 536 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ETS1P14921 441 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PRKCHP24723 683 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 RPL22P35268 128 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 NUMBP49757 651 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 STK19P49842 368 aaPredicted RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 RENBPP51606 427 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 EIF3BP55884 814 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 ARF5P84085 180 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 SATB1Q01826 763 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 GBE1Q04446 702 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 RAD51Q06609 339 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 GAS6Q14393 721 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ELAVL3Q14576 367 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 DLG2Q15700 870 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 RNASEH2BQ5TBB1 312 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 AFMIDQ63HM1 303 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 C22orf39Q6P5X5 142 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PKN3Q6P5Z2 889 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 LINGO4Q6UY18 593 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PRUNE1Q86TP1 453 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ALYREFQ86V81 257 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 ZC3H18Q86VM9 953 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 RELL1Q8IUW5 271 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ARHGAP12Q8IWW6 846 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PGBD3Q8N328 593 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PCDH20Q8N6Y1 951 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 FAM71DQ8N9W8 422 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 OR2T3Q8NH03 318 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 OR8D1Q8WZ84 308 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ISG20Q96AZ6 181 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 MRGPRX3Q96LB0 322 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ZNF599Q96NL3 588 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ACOX2Q99424 681 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 NOL6Q9H6R4 1146 aaKnown RBP10.23□□□□□ -0.77
UPF1-213ENST00000601981 USP29Q9HBJ7 922 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ZDHHC4Q9NPG8 344 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 ETNK2Q9NVF9 386 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 DTLQ9NZJ0 730 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 PAK5Q9P286 719 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 NFS1Q9Y697 457 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 SPAG17Q6Q759 2223 aa10.23□□□□□ -0.77
UPF1-213ENST00000601981 CCDC163A0A0D9SF12 145 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 TTC34A8MYJ7 566 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 WASH3PC4AMC7 463 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 C1QTNF3-AMACRE9PGA6 284 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 KCNN4O15554 427 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 BNIP3LO60238 219 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 ADAM23O75077 832 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 ZMPSTE24O75844 475 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 IGSF6O95976 241 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 ACADMP11310 421 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 HLA-EP13747 358 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 GLDCP23378 1020 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 HOXA6P31267 233 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 ACTN2P35609 894 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 GARSP41250 739 aaKnown RBP10.22□□□□□ -0.77
UPF1-213ENST00000601981 RHOAP61586 193 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 SNRPD1P62314 119 aaKnown RBP10.22□□□□□ -0.77
UPF1-213ENST00000601981 FAM193AP78312 1265 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 CSTF1Q05048 431 aaKnown RBP10.22□□□□□ -0.77
UPF1-213ENST00000601981 ZNF33AQ06730 810 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 GALNT2Q10471 571 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 SLC10A2Q12908 348 aaPredicted RBP10.22□□□□□ -0.77
UPF1-213ENST00000601981 CAMK2GQ13555 558 aaPredicted RBP10.22□□□□□ -0.77
UPF1-213ENST00000601981 ZNF235Q14590 738 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 ANGPT1Q15389 498 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 ZNF528Q3MIS6 628 aa10.22□□□□□ -0.77
UPF1-213ENST00000601981 TTC31Q49AM3 519 aaPredicted RBP10.22□□□□□ -0.77
UPF1-213ENST00000601981 FAM46CQ5VWP2 391 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms