RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SEMA3CQ99985 751 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 SESN1Q9Y6P5 492 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 RFC2P35250 354 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 MTM1Q13496 603 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 TERF2Q15554 542 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 TIMM50Q3ZCQ8 353 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 CAPN13Q6MZZ7 669 aaPredicted RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 RPTNQ6XPR3 784 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 GPR141Q7Z602 305 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ACDQ96AP0 544 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 APOPT1Q96IL0 206 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ITSN1Q15811 1721 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 PSMD10O75832 226 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 SARSP49591 514 aaKnown RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 MTAPQ13126 283 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 FASTKQ14296 549 aaKnown RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 ZNF571Q7Z3V5 609 aaPredicted RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 MAB21L3Q8N8X9 362 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 DUS2Q9NX74 493 aaKnown RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 BTBD19C9JJ37 291 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 PER2O15055 1255 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 LDLRP01130 860 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ELK3P41970 407 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 CCZ1BP86790 482 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 CCZ1P86791 482 aaPredicted RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 CDK18Q07002 472 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 TRIM32Q13049 653 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 OTOP3Q7RTS5 596 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 FAM124AQ86V42 546 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ZIM3Q96PE6 472 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 TM6SF2Q9BZW4 377 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ROGDIQ9GZN7 287 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 CDC42EP4Q9H3Q1 356 aaKnown RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 REEP1Q9H902 201 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 IL17RBQ9NRM6 502 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 KLQ9UEF7 1012 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 PCDHB1Q9Y5F3 818 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 MASP1P48740 699 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 YBEYP58557 167 aaPredicted RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 SAMD4BQ5PRF9 694 aaKnown RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 CLIP3Q96DZ5 547 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 Q96MT0 163 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 BMP7P18075 431 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 TM4SF1P30408 202 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 INO80DQ53TQ3 878 aaPredicted RBP20.63■□□□□ 0.89
UPF1-207ENST00000599848 KRT74Q7RTS7 529 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 CLCC1Q96S66 551 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ZNF607Q96SK3 696 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 VPS4AQ9UN37 437 aa20.63■□□□□ 0.89
UPF1-207ENST00000599848 ELNP15502 786 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 UGT1A5P35504 534 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 MRPS5P82675 430 aaKnown RBP20.62■□□□□ 0.89
UPF1-207ENST00000599848 LAPTM5Q13571 262 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 TBCELQ5QJ74 424 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 TATDN1Q6P1N9 297 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 INHAP05111 366 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 SLC1A6P48664 564 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 PNLIPRP1P54315 467 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 PSMC6P62333 389 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 MRPS22P82650 360 aaKnown RBP20.62■□□□□ 0.89
UPF1-207ENST00000599848 KCNA10Q16322 511 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 ZNF618Q5T7W0 954 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 KLHL24Q6TFL4 600 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 SCUBE1Q8IWY4 988 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 OR10H5Q8NGA6 315 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 HPSEQ9Y251 543 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 PSMD4P55036 377 aaKnown RBP20.62■□□□□ 0.89
UPF1-207ENST00000599848 C2CD6Q53TS8 623 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 IKBIPQ70UQ0 350 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 CCDC33Q8N5R6 958 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 SMYD1Q8NB12 490 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 ULK1O75385 1050 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 RNASEH2AO75792 299 aaKnown RBP20.62■□□□□ 0.89
UPF1-207ENST00000599848 OR6B1O95007 311 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 LYPLA2O95372 231 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 EPHX1P07099 455 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 KDELR1P24390 212 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 FLT3P36888 993 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 NME5P56597 212 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 COX10Q12887 443 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 TRIM40Q6P9F5 258 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 CHST9Q7L1S5 443 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 SLC35C1Q96A29 364 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 REXO4Q9GZR2 422 aaKnown RBP20.62■□□□□ 0.89
UPF1-207ENST00000599848 INVSQ9Y283 1065 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 PCDHA2Q9Y5H9 948 aa20.62■□□□□ 0.89
UPF1-207ENST00000599848 INO80Q9ULG1 1556 aaPredicted RBP20.61■□□□□ 0.89
UPF1-207ENST00000599848 BIRC5O15392 142 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 KCNA3P22001 575 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 CMPK1P30085 196 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 CAPSQ13938 189 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 LRRC36Q1X8D7 754 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 DHFR2Q86XF0 187 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 SLC9A9Q8IVB4 645 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 RAVER1Q8IY67 606 aaKnown RBP20.61■□□□□ 0.89
UPF1-207ENST00000599848 FAM20BO75063 409 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 NR2F1P10589 423 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 H2AFXP16104 143 aaPredicted RBP20.61■□□□□ 0.89
UPF1-207ENST00000599848 MATKP42679 507 aa20.61■□□□□ 0.89
UPF1-207ENST00000599848 MIIPQ5JXC2 388 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms