RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PLOD1Q02809 727 aaPredicted RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 OTUD1Q5VV17 481 aaPredicted RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 ZYG11AQ6WRX3 759 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 B3GNT6Q6ZMB0 384 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 TMEM40Q8WWA1 233 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 C16orf70Q9BSU1 422 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 C11orf84Q9BUA3 381 aaPredicted RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 EIF2B3Q9NR50 452 aaKnown RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 PCDHGA4Q9Y5G9 962 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 SMIM31A0A1B0GVY4 71 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 YWHAQP27348 245 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 GABRB3P28472 473 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 RGS2P41220 211 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 MAPK10P53779 464 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 NAB1Q13506 487 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 FASTKQ14296 549 aaKnown RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 PIGGQ5H8A4 983 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 HABP4Q5JVS0 413 aaKnown RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 NAPEPLDQ6IQ20 393 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 RBM12BQ8IXT5 1001 aaKnown RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 BTBD9Q96Q07 612 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 NPY6RQ99463 290 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 IL22Q9GZX6 179 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 AP4S1Q9Y587 144 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 DCLK1O15075 740 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 UGT1A6P19224 532 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 CYP2B6P20813 491 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 MAXP61244 160 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 RBM20Q5T481 1227 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 CCDC80Q76M96 950 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 PGAM4Q8N0Y7 254 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 LRRC52Q8N7C0 313 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 HEXDCQ8WVB3 486 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 LPGAT1Q92604 370 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 RPL10LQ96L21 214 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 SPON1Q9HCB6 807 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 NCKIPSDQ9NZQ3 722 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 ADAM28Q9UKQ2 775 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 PRPF19Q9UMS4 504 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 FZD9O00144 591 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 DAB1O75553 588 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 AFF1P51825 1210 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 FAM83EQ2M2I3 478 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 CNSTQ6PJW8 725 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 CYS1Q717R9 158 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 CENPLQ8N0S6 344 aaPredicted RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 TXNDC5Q8NBS9 432 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 ABHD8Q96I13 439 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 GBA3Q9H227 469 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 RHOJQ9H4E5 214 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 ZNF638Q14966 1978 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 RGPD3A6NKT7 1758 aaPredicted RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 RGPD4Q7Z3J3 1758 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 CASTOR2A6NHX0 329 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 VILLO15195 856 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 XPOTO43592 962 aaKnown RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 FOXD2O60548 495 aaPredicted RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 CABYRO75952 493 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 PGK1P00558 417 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 GRIA3P42263 894 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 METTL21CQ5VZV1 264 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 PRICKLE1Q96MT3 831 aaPredicted RBP15.42■□□□□ 0.06
UPF1-204ENST00000596842 NFKBIZQ9BYH8 718 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 DSEQ9UL01 958 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 ANK1P16157 1881 aa15.42■□□□□ 0.06
UPF1-204ENST00000596842 UBDO15205 165 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CD4P01730 458 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 MT-ND1P03886 318 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CLCN2P51788 898 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 DPYSQ14117 519 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 ZNF789Q5FWF6 425 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 MARCH8Q5T0T0 291 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 PDE4DIPQ5VU43 2346 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 ATPAF2Q8N5M1 289 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 FAM110BQ8TC76 370 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 LPPQ93052 612 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 COLEC11Q9BWP8 271 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 DNAI2Q9GZS0 605 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 ZBTB26Q9HCK0 441 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CASS4Q9NQ75 786 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CRYL1Q9Y2S2 319 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 MTF2Q9Y483 593 aaPredicted RBP15.41■□□□□ 0.06
UPF1-204ENST00000596842 MSI1O43347 362 aaKnown RBP15.41■□□□□ 0.06
UPF1-204ENST00000596842 TOMM70O94826 608 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CTSHP09668 335 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CCDC166P0CW27 439 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 KCNA5P22460 613 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 SLC1A2P43004 574 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 RAB10P61026 200 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 SV2CQ496J9 727 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CRYBG2Q8N1P7 616 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 MPP6Q9NZW5 540 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 SFMBT1Q9UHJ3 866 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 RIMS3Q9UJD0 308 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 TSR3Q9UJK0 312 aaKnown RBP15.41■□□□□ 0.06
UPF1-204ENST00000596842 CLIC3O95833 236 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 SBK3P0C264 359 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 TUFMP49411 452 aaKnown RBP15.41■□□□□ 0.06
UPF1-204ENST00000596842 C16orf72Q14CZ0 275 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms