RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 GRIA1P42261 906 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 MAPK8P45983 427 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 AP1S1P61966 158 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 SNRPD1P62314 119 aaKnown RBP14.83□□□□□ -0.03
VRK3-212ENST00000596814 PFKPQ01813 784 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 DHX9Q08211 1270 aaKnown RBP14.83□□□□□ -0.03
VRK3-212ENST00000596814 OLIG2Q13516 323 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 IHHQ14623 411 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 SLMAPQ14BN4 828 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 DGKKQ5KSL6 1271 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 BEND6Q5SZJ8 279 aaPredicted RBP14.83□□□□□ -0.03
VRK3-212ENST00000596814 FNBP1LQ5T0N5 605 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 LRRC8BQ6P9F7 803 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 SRLQ86TD4 932 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 CAND1Q86VP6 1230 aaKnown RBP14.83□□□□□ -0.03
VRK3-212ENST00000596814 SFTPA1Q8IWL2 248 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 OR2AP1Q8NGE2 309 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 MYO19Q96H55 970 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 P2RY13Q9BPV8 354 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 APOL2Q9BQE5 337 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 C8orf33Q9H7E9 229 aaPredicted RBP14.83□□□□□ -0.03
VRK3-212ENST00000596814 SAYSD1Q9NPB0 183 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 HEBP1Q9NRV9 189 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 THEGQ9P2T0 379 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 PLA2G4CQ9UP65 541 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 PIAS3Q9Y6X2 628 aa14.83□□□□□ -0.03
VRK3-212ENST00000596814 E7ESA3 106 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 EIF3HO15372 352 aaKnown RBP eCLIP14.83□□□□□ -0.04
VRK3-212ENST00000596814 NARSO43776 548 aaKnown RBP14.83□□□□□ -0.04
VRK3-212ENST00000596814 ADRA1AP35348 466 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 MAGEA3P43357 314 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 CSNK1DP48730 415 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 PDIA2Q13087 525 aaKnown RBP14.83□□□□□ -0.04
VRK3-212ENST00000596814 MTM1Q13496 603 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 TDGQ13569 410 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 BBS9Q3SYG4 887 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 DNAJC21Q5F1R6 531 aaKnown RBP14.83□□□□□ -0.04
VRK3-212ENST00000596814 NCEH1Q6PIU2 408 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 RALGPS2Q86X27 583 aaPredicted RBP14.83□□□□□ -0.04
VRK3-212ENST00000596814 OR52K1Q8NGK4 314 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 CASS4Q9NQ75 786 aa14.83□□□□□ -0.04
VRK3-212ENST00000596814 AP3B1O00203 1094 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 AVILO75366 819 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 BANF1O75531 89 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 AGTP01019 485 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 SRFP11831 508 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 GALK1P51570 392 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 CDH17Q12864 832 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 MSS51Q4VC12 460 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 FNDC3BQ53EP0 1204 aaKnown RBP14.82□□□□□ -0.04
VRK3-212ENST00000596814 TXNDC11Q6PKC3 985 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 Q6ZVU0 165 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 ADHFE1Q8IWW8 467 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 RYBPQ8N488 228 aaPredicted RBP14.82□□□□□ -0.04
VRK3-212ENST00000596814 DNAAF3Q8N9W5 541 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 KDM1BQ8NB78 822 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 OR6K2Q8NGY2 324 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 FRS2Q8WU20 508 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 IFT43Q96FT9 208 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 FEM1CQ96JP0 617 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 NSMCE3Q96MG7 304 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 TXLNGYQ9BZA5 131 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 SLC2A4RGQ9NR83 387 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 PIH1D1Q9NWS0 290 aaKnown RBP14.82□□□□□ -0.04
VRK3-212ENST00000596814 PRKAG3Q9UGI9 489 aa14.82□□□□□ -0.04
VRK3-212ENST00000596814 EVLQ9UI08 416 aaPredicted RBP14.82□□□□□ -0.04
VRK3-212ENST00000596814 TTC34A8MYJ7 566 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 BNIP3LO60238 219 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 CA4P22748 312 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 RECQLP46063 649 aaPredicted RBP14.81□□□□□ -0.04
VRK3-212ENST00000596814 PMS2P54278 862 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 SESN2P58004 480 aaPredicted RBP14.81□□□□□ -0.04
VRK3-212ENST00000596814 ZP2Q05996 745 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 CDK18Q07002 472 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 ZNF234Q14588 700 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 CARD16Q5EG05 197 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 KDELC2Q7Z4H8 507 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 RELL1Q8IUW5 271 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 ZBED8Q8IZ13 594 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 MSANTD3Q96H12 275 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 TDRD1Q9BXT4 1180 aaKnown RBP14.81□□□□□ -0.04
VRK3-212ENST00000596814 CDC42EP4Q9H3Q1 356 aaKnown RBP14.81□□□□□ -0.04
VRK3-212ENST00000596814 FBRSL1Q9HCM7 1045 aaKnown RBP14.81□□□□□ -0.04
VRK3-212ENST00000596814 HECAQ9UBI9 543 aaPredicted RBP14.81□□□□□ -0.04
VRK3-212ENST00000596814 RAI2Q9Y5P3 530 aa14.81□□□□□ -0.04
VRK3-212ENST00000596814 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.8□□□□□ -0.04
VRK3-212ENST00000596814 MAGEA4P43358 317 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 CCNHP51946 323 aaPredicted RBP14.8□□□□□ -0.04
VRK3-212ENST00000596814 RAD51Q06609 339 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 TRAF2Q12933 501 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 CBLBQ13191 982 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 FASTKD3Q14CZ7 662 aaKnown RBP14.8□□□□□ -0.04
VRK3-212ENST00000596814 RANBP10Q6VN20 620 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 DPY19L3Q6ZPD9 716 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 PLPP6Q8IY26 295 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 MREGQ8N565 214 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 LRRC39Q96DD0 335 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 ATP13A3Q9H7F0 1226 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 DUSP12Q9UNI6 340 aa14.8□□□□□ -0.04
VRK3-212ENST00000596814 STARD13Q9Y3M8 1113 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms