RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 FCARP24071 287 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 GRIA1P42261 906 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 EIF3BP55884 814 aaKnown RBP13.65□□□□□ -0.22
VMP1-217ENST00000593168 STARD6P59095 220 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 SLC20A2Q08357 652 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 SLC29A2Q14542 456 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 DMC1Q14565 340 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 PDGFRLQ15198 375 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 DHCR24Q15392 516 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 CYTH1Q15438 398 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 RSPO4Q2I0M5 234 aaPredicted RBP13.65□□□□□ -0.22
VMP1-217ENST00000593168 PLEKHG6Q3KR16 790 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 CCDC38Q502W7 563 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 ALG1LQ6GMV1 187 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 NAPEPLDQ6IQ20 393 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 PARM1Q6UWI2 310 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 METTL3Q86U44 580 aaKnown RBP13.65□□□□□ -0.22
VMP1-217ENST00000593168 PRPF39Q86UA1 669 aaKnown RBP13.65□□□□□ -0.22
VMP1-217ENST00000593168 PGBD5Q8N414 524 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 ARRDC2Q8TBH0 407 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 PYROXD1Q8WU10 500 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 FGF14Q92915 247 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 TADA1Q96BN2 335 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 PKNOX2Q96KN3 472 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 SIGLEC10Q96LC7 697 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 C9orf72Q96LT7 481 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 FAM83CQ9BQN1 747 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 MGME1Q9BQP7 344 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 CINPQ9BW66 212 aaPredicted RBP13.65□□□□□ -0.22
VMP1-217ENST00000593168 CASS4Q9NQ75 786 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 THG1LQ9NWX6 298 aaKnown RBP13.65□□□□□ -0.22
VMP1-217ENST00000593168 VPS51Q9UID3 782 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 FBXO10Q9UK96 956 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 PLAAQ9Y263 795 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 TTLL3Q9Y4R7 772 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 NFS1Q9Y697 457 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 TEX264Q9Y6I9 313 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 NCOR2Q9Y618 2525 aa13.65□□□□□ -0.22
VMP1-217ENST00000593168 KMT2BQ9UMN6 2715 aaPredicted RBP13.64□□□□□ -0.23
VMP1-217ENST00000593168 MYOFQ9NZM1 2061 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 SDR42E2A6NKP2 422 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 NEDD8-MDP1E9PL57 170 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 AGPSO00116 658 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 HOXC11O43248 304 aaPredicted RBP13.64□□□□□ -0.23
VMP1-217ENST00000593168 SNAP91O60641 907 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 NFATC1O95644 943 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 ADH1CP00326 375 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 HLA-FP30511 346 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 CD70P32970 193 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 MAXP61244 160 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 ITKQ08881 620 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 NSUN2Q08J23 767 aaKnown RBP eCLIP13.64□□□□□ -0.23
VMP1-217ENST00000593168 NIPAL4Q0D2K0 466 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 GPS2Q13227 327 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 SPARCL1Q14515 664 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 FASTKD3Q14CZ7 662 aaKnown RBP13.64□□□□□ -0.23
VMP1-217ENST00000593168 SLC14A2Q15849 920 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 TANGO2Q6ICL3 276 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 KDELC1Q6UW63 502 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 LEKR1Q6ZMV7 388 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 KIAA0907Q7Z7F0 614 aaPredicted RBP13.64□□□□□ -0.23
VMP1-217ENST00000593168 MFSD6LQ8IWD5 586 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 PALM2Q8IXS6 379 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 APCDD1Q8J025 514 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.64□□□□□ -0.23
VMP1-217ENST00000593168 SPATA22Q8NHS9 363 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 CNTNAP3BQ96NU0 1288 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 CNTNAP3Q9BZ76 1288 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 LRRC4CQ9HCJ2 640 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 ABCB8Q9NUT2 735 aa13.64□□□□□ -0.23
VMP1-217ENST00000593168 INTS6Q9UL03 887 aaKnown RBP13.64□□□□□ -0.23
VMP1-217ENST00000593168 MTF2Q9Y483 593 aaPredicted RBP13.64□□□□□ -0.23
VMP1-217ENST00000593168 MUSKO15146 869 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 OPA1O60313 960 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 AVILO75366 819 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 BANF1O75531 89 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 SPAG6O75602 509 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 KRT37O76014 449 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 ACSL3O95573 720 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 MT-CYBP00156 380 aaPredicted RBP13.63□□□□□ -0.23
VMP1-217ENST00000593168 CYP17A1P05093 508 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 MMP2P08253 660 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 GSTA2P09210 222 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 PABPC1P11940 636 aaKnown RBP13.63□□□□□ -0.23
VMP1-217ENST00000593168 CR2P20023 1033 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 ADRA1AP35348 466 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 ELK3P41970 407 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 NPY2RP49146 381 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 DSC2Q02487 901 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 SULT2A1Q06520 285 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 FCHO2Q0JRZ9 810 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 CDH17Q12864 832 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 PITRM1Q5JRX3 1037 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 RANBP10Q6VN20 620 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 CROCCP2Q86T23 111 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 CCNJLQ8IV13 435 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 ANKMY2Q8IV38 441 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 AGGF1Q8N302 714 aaeCLIP13.63□□□□□ -0.23
VMP1-217ENST00000593168 ATP11CQ8NB49 1132 aa13.63□□□□□ -0.23
VMP1-217ENST00000593168 FBXO36Q8NEA4 188 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms