RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SLC24A5Q71RS6 500 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 KDELC2Q7Z4H8 507 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 COLGALT2Q8IYK4 626 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 AGR3Q8TD06 166 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ACTRT2Q8TDY3 377 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 FATE1Q969F0 183 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 MIEF2Q96C03 454 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 MOCOSQ96EN8 888 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 OR52B2Q96RD2 323 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 FAM167BQ9BTA0 163 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 FBXO44Q9H4M3 255 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ATP13A1Q9HD20 1204 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 TCF7L2Q9NQB0 619 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 PRDM5Q9NQX1 630 aaPredicted RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 ANGPTL2Q9UKU9 493 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 PIGNO95427 931 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 COX4I1P13073 169 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 PRKAR2AP13861 404 aaKnown RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 RHOQP17081 205 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 CD151P48509 253 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 RENBPP51606 427 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 NAGLUP54802 743 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 TBX4P57082 545 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 USP46P62068 366 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 AP2B1P63010 937 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 DLG1Q12959 904 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 KLF10Q13118 480 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 PRKAA1Q13131 559 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 MS4A13Q5J8X5 152 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 NOMO2Q5JPE7 1267 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ZNF470Q6ECI4 717 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 NEPROQ6NW34 567 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 FRMD7Q6ZUT3 714 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ARHGAP18Q8N392 663 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 PPFIBP2Q8ND30 876 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 NXNL1Q96CM4 212 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 IMP4Q96G21 291 aaKnown RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 ZIC5Q96T25 663 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ZYG11BQ9C0D3 744 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 NYNRINQ9P2P1 1898 aaKnown RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 XPR1Q9UBH6 696 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 LOC100653049A0A140TA62 436 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 GRID2O43424 1007 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 DLX3O60479 287 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 FKBP6O75344 327 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 KRT34O76011 436 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 CKBP12277 381 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TFEBP19484 476 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 ITGAXP20702 1163 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 GRK4P32298 578 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 CCR10P46092 362 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 OR1G1P47890 313 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TAS2R39P59534 338 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 FAM189BP81408 668 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 SEPT6Q14141 434 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 PCSK7Q16549 785 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 SEL1L3Q68CR1 1132 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TRAF7Q6Q0C0 670 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 KIAA0408Q6ZU52 694 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TMC7Q7Z402 723 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 LMNTD2Q8IXW0 634 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 LSMEM2Q8N112 164 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 SHKBP1Q8TBC3 707 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 STON2Q8WXE9 905 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 LINC01599Q8WXQ3 324 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 FAM136AQ96C01 138 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 HMCESQ96FZ2 354 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 ELMO2Q96JJ3 720 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 SHCBP1LQ9BZQ2 653 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 WDR55Q9H6Y2 383 aaPredicted RBP10.18□□□□□ -0.78
VPS53-220ENST00000576149 ACSS2Q9NR19 701 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TMEM248Q9NWD8 314 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 IL37Q9NZH6 218 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 GMIPQ9P107 970 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 VTI1BQ9UEU0 232 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 FBXO5Q9UKT4 447 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 IGLV3-10A0A075B6K4 115 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 A0A087X1B8 175 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 HEATR9A2RTY3 570 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TMEM88BA6NKF7 163 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 SLCO1B7G3V0H7 640 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 J3KR12 359 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 MAP3K7O43318 606 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 POU4F1Q01851 419 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 MBTPS1Q14703 1052 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 VARS2Q5ST30 1063 aaKnown RBP10.18□□□□□ -0.78
VPS53-220ENST00000576149 AAGABQ6PD74 315 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 TFAP2DQ7Z6R9 452 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 SLC25A41Q8N5S1 370 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 PDCD6IPQ8WUM4 868 aaKnown RBP10.18□□□□□ -0.78
VPS53-220ENST00000576149 CNDP1Q96KN2 507 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 LENG8Q96PV6 779 aaPredicted RBP10.18□□□□□ -0.78
VPS53-220ENST00000576149 RANBP9Q96S59 729 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 RTKNQ9BST9 563 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 MRPL46Q9H2W6 279 aaKnown RBP10.18□□□□□ -0.78
VPS53-220ENST00000576149 NT5MQ9NPB1 228 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 VPS45Q9NRW7 570 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 DONSONQ9NYP3 566 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 ZDHHC2Q9UIJ5 367 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms