RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 HMGB4Q8WW32 186 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 PRCCQ92733 491 aaPredicted RBP8.68□□□□□ -1.02
NUP88-211ENST00000575976 SIPA1Q96FS4 1042 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 TEKT5Q96M29 485 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 AGAP3Q96P47 875 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 NUDCD1Q96RS6 583 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 NAP1L3Q99457 506 aaPredicted RBP8.68□□□□□ -1.02
NUP88-211ENST00000575976 TMEM121Q9BTD3 319 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 TPSD1Q9BZJ3 242 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 POLR1EQ9GZS1 481 aaKnown RBP8.68□□□□□ -1.02
NUP88-211ENST00000575976 ZDHHC6Q9H6R6 413 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 FBRSQ9HAH7 460 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 BCCIPQ9P287 314 aaKnown RBP eCLIP8.68□□□□□ -1.02
NUP88-211ENST00000575976 IL36AQ9UHA7 158 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 AMACRQ9UHK6 382 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 SARDHQ9UL12 918 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 PPM1HQ9ULR3 514 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 ZNF148Q9UQR1 794 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 TTLL3Q9Y4R7 772 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 WASF2Q9Y6W5 498 aa8.68□□□□□ -1.02
NUP88-211ENST00000575976 TPRP12270 2363 aaKnown RBP8.68□□□□□ -1.02
NUP88-211ENST00000575976 FAM186AA6NE01 2351 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 C1QTNF3-AMACRE9PGA6 284 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 KIF2AO00139 706 aaPredicted RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 MID1O15344 667 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 RNASEH1O60930 286 aaKnown RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 LEFTY1O75610 366 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 URI1O94763 535 aaPredicted RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 PIGNO95427 931 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 PRNPP04156 253 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 C7P10643 843 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 SLC8A1P32418 973 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 CD68P34810 354 aaPredicted RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 PAFAH1B1P43034 410 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 FNTBP49356 437 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 METAP1P53582 386 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 GDF10P55107 478 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 RAD51Q06609 339 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 BYSLQ13895 437 aaKnown RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 IHHQ14623 411 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 ANGPT1Q15389 498 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 CST6Q15828 149 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 CYP1B1Q16678 543 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 POM121L1PQ3SYA9 428 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 TTC27Q6P3X3 843 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 DRICH1Q6PGQ1 229 aaPredicted RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 DGLUCYQ7Z3D6 616 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 DSG4Q86SJ6 1040 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 PRUNE1Q86TP1 453 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 FAM71DQ8N9W8 422 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 TMIEQ8NEW7 156 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 CCDC110Q8TBZ0 833 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 GRIN3AQ8TCU5 1115 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 MAGOHBQ96A72 148 aaKnown RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 ARRDC3Q96B67 414 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 KLHL32Q96NJ5 620 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 VAT1Q99536 393 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 SEMA3CQ99985 751 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 FERMT1Q9BQL6 677 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 CPEB1Q9BZB8 566 aaKnown RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 NOD2Q9HC29 1040 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 GLOD4Q9HC38 313 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 CD93Q9NPY3 652 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 SCUBE2Q9NQ36 999 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 HOMER3Q9NSC5 361 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 KLHL8Q9P2G9 620 aaPredicted RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 RNF14Q9UBS8 474 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 EBF1Q9UH73 591 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 FBXO4Q9UKT5 387 aa8.67□□□□□ -1.02
NUP88-211ENST00000575976 DRG1Q9Y295 367 aaKnown RBP8.67□□□□□ -1.02
NUP88-211ENST00000575976 GVINP1Q7Z2Y8 2422 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 CKAP5Q14008 2032 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 SHROOM3Q8TF72 1996 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 A0A1W2PP55 124 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 CFAP69A5D8W1 941 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 C5orf60A6NFR6 353 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 F5H423 210 aaPredicted RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 PLK4O00444 970 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 KPNA3O00505 521 aaPredicted RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 AXIN1O15169 862 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 PHF2O75151 1096 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 STK10O94804 968 aaKnown RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 ADH1BP00325 375 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 DNTTP04053 509 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 UGT2B4P06133 528 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ITGAVP06756 1048 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 MMP2P08253 660 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 SP9P0CG40 484 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ACADMP11310 421 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ETS1P14921 441 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 NFKB1P19838 968 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 C5AR1P21730 350 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 HOXA6P31267 233 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 STIP1P31948 543 aaKnown RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 DRD3P35462 400 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 COILP38432 576 aaPredicted RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 AP1S1P61966 158 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 SKOR1P84550 965 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ZBTB16Q05516 673 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 BCL2L1Q07817 233 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms