RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PSME4Q14997 1843 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 MYH13Q9UKX3 1938 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CENPVL1A0A0U1RR11 272 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GAGE12BA1L429 117 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 MAGEB16A2A368 324 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 FUOMA2VDF0 154 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CDHR4A6H8M9 788 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GAGE12HA6NDE8 117 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SMCO2A6NFE2 343 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CCT8L1PA6NM43 557 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SIGLEC16A6NMB1 481 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 EIF4E1BA6NMX2 242 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 H7C0C1 242 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TRIM77I1YAP6 450 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 XPO1O14980 1071 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 BET1O15155 118 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SLC22A1O15245 554 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SLC7A4O43246 635 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 HOXC11O43248 304 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 PCDHGA12O60330 932 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 RSL1D1O76021 490 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 KRT75O95678 551 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 AGR2O95994 175 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 IFNA14P01570 189 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CD4P01730 458 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 AMY1AP04745 511 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GNAI2P04899 355 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 KRT18P05783 430 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 ATP5BP06576 529 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 PIM1P11309 404 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 SELLP14151 372 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ZNF12P17014 697 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NR1D1P20393 614 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TNFAIP3P21580 790 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TCEA1P23193 301 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 SLC6A2P23975 617 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 DDX6P26196 483 aaKnown RBP eCLIP3.33□□□□□ -1.88
VPS35-208ENST00000568612 GSTM2P28161 218 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 HOXA6P31267 233 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 HOXD13P35453 343 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SOX6P35712 828 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ATP6V1E1P36543 226 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 MDH1P40925 334 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 STT3AP46977 705 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ME1P48163 572 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CLK3P49761 638 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 GDI2P50395 445 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 USP14P54578 494 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 HADHBP55084 474 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 P2RX3P56373 397 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GNG2P59768 71 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ATP6V0D1P61421 351 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NCALDP61601 193 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GNG11P61952 73 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TAP1Q03518 808 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 DPTQ07507 201 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 FCHO2Q0JRZ9 810 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SCRN3Q0VDG4 424 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CDC20Q12834 499 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 STK4Q13043 487 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GRM1Q13255 1194 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 IL10RAQ13651 578 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TRIM14Q14142 442 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 RCN2Q14257 317 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 RFTN1Q14699 578 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 OASLQ15646 514 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 ALX1Q15699 326 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TAF12Q16514 161 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 STX1AQ16623 288 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TMEM266Q2M3C6 531 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 AARS2Q5JTZ9 985 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 FAM102AQ5T9C2 384 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 VWA5B1Q5TIE3 1220 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 AADACL4Q5VUY2 407 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TPGS2Q68CL5 300 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NIPAL1Q6NVV3 410 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 FOXR2Q6PJQ5 311 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 DHRS4L2Q6PKH6 230 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GADL1Q6ZQY3 521 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PIK3AP1Q6ZUJ8 805 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CCDC149Q6ZUS6 474 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 USP43Q70EL4 1123 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 UNC13DQ70J99 1090 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GPR142Q7Z601 462 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GPR141Q7Z602 305 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 HEATR4Q86WZ0 1026 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 MAPKAPK5Q8IW41 473 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CCDC28AQ8IWP9 274 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CD302Q8IX05 232 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 LRRC34Q8IZ02 419 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ST13P4Q8IZP2 240 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 FITM2Q8N6M3 262 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NAT8LQ8N9F0 302 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ZNF540Q8NDQ6 660 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ZNF680Q8NEM1 530 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 AENQ8WTP8 325 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 NOC3LQ8WTT2 800 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 UCMAQ8WVF2 138 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SLC9A6Q92581 669 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms