RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SERPINH1P50454 418 aaKnown RBP20.49■□□□□ 0.87
CLN3-230ENST00000568076 IL10RBQ08334 325 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 USP4Q13107 963 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 RCN2Q14257 317 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 PARP15Q460N3 678 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 WASHC2DQ5SRD0 308 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 SNX30Q5VWJ9 437 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 NEPROQ6NW34 567 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 FBXO22Q8NEZ5 403 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 TTC8Q8TAM2 541 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 C2orf15Q8WU43 125 aaKnown RBP20.49■□□□□ 0.87
CLN3-230ENST00000568076 GPR78Q96P69 363 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 RANBP9Q96S59 729 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 TTLL2Q9BWV7 592 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 UNC93B1Q9H1C4 597 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 TAGLN3Q9UI15 199 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 FBXO5Q9UKT4 447 aa20.49■□□□□ 0.87
CLN3-230ENST00000568076 RPL26L1Q9UNX3 145 aaKnown RBP20.49■□□□□ 0.87
CLN3-230ENST00000568076 RUVBL2Q9Y230 463 aaKnown RBP20.49■□□□□ 0.87
CLN3-230ENST00000568076 B2RBV5 119 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 TMEM114B3SHH9 223 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 TARM1B6A8C7 271 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 ENTPD5O75356 428 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 RPL17P18621 184 aaKnown RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 RAB10P61026 200 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 DLG1Q12959 904 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 ZNF789Q5FWF6 425 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 TSTD2Q5T7W7 516 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 ZYG11AQ6WRX3 759 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 FSTL5Q8N475 847 aaPredicted RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 OR13J1Q8NGT2 312 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 FAM167BQ9BTA0 163 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 ACSS2Q9NR19 701 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 MUSKO15146 869 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 ANP32DO95626 131 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 HSPA4LO95757 839 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 EFEMP2O95967 443 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 MYCP01106 439 aaPredicted RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 APOA4P06727 396 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 EZRP15311 586 aaKnown RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 CD151P48509 253 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 POLD2P49005 469 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 CCL23P55773 120 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 KDSRQ06136 332 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 CNSTQ6PJW8 725 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 SPNS2Q8IVW8 549 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 CFAP52Q8N1V2 620 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 SPATA6LQ8N4H0 392 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 RBM15BQ8NDT2 890 aaKnown RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 RDH11Q8TC12 318 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 VN1R3Q9BXE9 311 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 CDH19Q9H159 772 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 RNPEPL1Q9HAU8 725 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 UXTQ9UBK9 157 aaPredicted RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 APOBEC2Q9Y235 224 aaKnown RBP20.48■□□□□ 0.87
CLN3-230ENST00000568076 ACOT9Q9Y305 439 aa20.48■□□□□ 0.87
CLN3-230ENST00000568076 MIA3Q5JRA6 1907 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 FKTNO75072 461 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 ATXN1LP0C7T5 689 aaKnown RBP20.47■□□□□ 0.87
CLN3-230ENST00000568076 STMN1P16949 149 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 AOC1P19801 751 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 SLC6A4P31645 630 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 MAPKAPK2P49137 400 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 TAS2R39P59534 338 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 LBRQ14739 615 aaKnown RBP20.47■□□□□ 0.87
CLN3-230ENST00000568076 TBCCQ15814 346 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 SIRPB2Q5JXA9 342 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 SLC8B1Q6J4K2 584 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 LCA5Q86VQ0 697 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 LGI2Q8N0V4 545 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 PNPLA1Q8N8W4 532 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 STYXQ8WUJ0 223 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 NSMCE1Q8WV22 266 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 NXNL1Q96CM4 212 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 ELMO2Q96JJ3 720 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 SEZ6LQ9BYH1 1024 aa20.47■□□□□ 0.87
CLN3-230ENST00000568076 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.47■□□□□ 0.87
CLN3-230ENST00000568076 PRAMEF11O60813 436 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 COL6A2P12110 1019 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 CCR10P46092 362 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 YBEYP58557 167 aaPredicted RBP20.46■□□□□ 0.87
CLN3-230ENST00000568076 RBM20Q5T481 1227 aaKnown RBP20.46■□□□□ 0.87
CLN3-230ENST00000568076 ACBD5Q5T8D3 534 aaPredicted RBP20.46■□□□□ 0.87
CLN3-230ENST00000568076 LIPMQ5VYY2 423 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 LRRC8EQ6NSJ5 796 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 LRRC43Q8N309 656 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 GPATCH11Q8N954 259 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 MCUR1Q96AQ8 359 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 SCYL1Q96KG9 808 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 FAM96AQ9H5X1 160 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 COG4Q9H9E3 785 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 PDFQ9HBH1 243 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 NOP53Q9NZM5 478 aaKnown RBP20.46■□□□□ 0.87
CLN3-230ENST00000568076 MTRRQ9UBK8 725 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 MID2Q9UJV3 735 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 SORCS3Q9UPU3 1222 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 LOC285095A0A1B0GVY8 99 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 MROH6A6NGR9 719 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 GJB5O95377 273 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 CHRNGP07510 517 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms