RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	C5AR1	P21730	350 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	SLC8A1	P32418	973 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	AP1S1	P61966	158 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	MAP7D1	Q3KQU3	841 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	POM121L1P	Q3SYA9	428 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	LONP2	Q86WA8	852 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	PGBD3	Q8N328	593 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	ZBTB44	Q8NCP5	570 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	LRIG1	Q96JA1	1093 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	AGAP3	Q96P47	875 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	SEMA3C	Q99985	751 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	TMEM121	Q9BTD3	319 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	FAM126A	Q9BYI3	521 aa	Predicted RBP	18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	POLR1E	Q9GZS1	481 aa	Known RBP	18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	ITM2C	Q9NQX7	267 aa		18.21	■□□□□ 0.51
COMMD4-222	ENST00000568034	NUMA1	Q14980	2115 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	ANKRD36	A6QL64	1941 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	PDE2A	O00408	941 aa	Predicted RBP	18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	TRAFD1	O14545	582 aa	Predicted RBP	18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZBTB24	O43167	697 aa	Predicted RBP	18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	DNTT	P04053	509 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	UGT2B4	P06133	528 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	P2RY2	P41231	377 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	MAPK8	P45983	427 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	TPMT	P51580	245 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	BYSL	Q13895	437 aa	Known RBP	18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	CYP1B1	Q16678	543 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	RALGPS1	Q5JS13	557 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	FAM46C	Q5VWP2	391 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	PARS2	Q7L3T8	475 aa	Known RBP	18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZSWIM9	Q86XI8	627 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	FRMD1	Q8N878	549 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	RLN3	Q8WXF3	142 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	TADA1	Q96BN2	335 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	RTP4	Q96DX8	246 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	TUBGCP5	Q96RT8	1024 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	VAT1	Q99536	393 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	AP1M1	Q9BXS5	423 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	OSBPL1A	Q9BXW6	950 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	SCUBE2	Q9NQ36	999 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	SCML1	Q9UN30	329 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	TTLL3	Q9Y4R7	772 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	FANCM	Q8IYD8	2048 aa		18.2	■□□□□ 0.5
COMMD4-222	ENST00000568034	IGHV1OR15-9	A0A0B4J2B8	117 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034		A0A1W2PP55	124 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	TSPAN11	A1L157	253 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	KPNA3	O00505	521 aa	Predicted RBP	18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	ITGB7	P26010	798 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	SKOR1	P84550	965 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	RAD51	Q06609	339 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	TRAF2	Q12933	501 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	SNX1	Q13596	522 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZNF805	Q5CZA5	627 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	PIP5KL1	Q5T9C9	394 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	AGBL4	Q5VU57	503 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	TTC27	Q6P3X3	843 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	GDPD4	Q6W3E5	623 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	USP30	Q70CQ3	517 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	PRPF39	Q86UA1	669 aa	Known RBP	18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	CAMK1D	Q8IU85	385 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	FAM71D	Q8N9W8	422 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	C12orf50	Q8NA57	414 aa	Predicted RBP	18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	ECHDC3	Q96DC8	303 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	IMP4	Q96G21	291 aa	Known RBP	18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	CAPZA3	Q96KX2	299 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	SPATA13	Q96N96	652 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	KLHL32	Q96NJ5	620 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	NAP1L3	Q99457	506 aa	Predicted RBP	18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	GORASP1	Q9BQQ3	440 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	GLOD4	Q9HC38	313 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZSCAN32	Q9NX65	697 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	FBXL12	Q9NXK8	326 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	KLHL8	Q9P2G9	620 aa	Predicted RBP	18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	CYP8B1	Q9UNU6	501 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	MUC6	Q6W4X9	2439 aa		18.19	■□□□□ 0.5
COMMD4-222	ENST00000568034	CFAP69	A5D8W1	941 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	C5orf60	A6NFR6	353 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	C10orf142	B7Z368	130 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	HTRA2	O43464	458 aa	Predicted RBP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	LILRB5	O75023	590 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	NEBL	O76041	1014 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ITGAV	P06756	1048 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	NFKB1	P19838	968 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	KCNJ1	P48048	391 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ITK	Q08881	620 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	CNTN1	Q12860	1018 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	SRSF5	Q13243	272 aa	Known RBP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	GRM3	Q14832	879 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	TTC31	Q49AM3	519 aa	Predicted RBP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ANKRD20A2	Q5SQ80	823 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ANKRD20A1	Q5TYW2	823 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ANKRD20A3	Q5VUR7	823 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	HDDC3	Q8N4P3	179 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	FAM160A2	Q8N612	972 aa	Predicted RBP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	CCDC110	Q8TBZ0	833 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZNF641	Q96N77	438 aa	Predicted RBP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	PRRX2	Q99811	253 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	HDAC8	Q9BY41	377 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	SLC25A51	Q9H1U9	297 aa		18.18	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms