RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 K7ERQ8 282 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 ARHGAP33O14559 1287 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 ZNF185O15231 689 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 BCAT2O15382 392 aaPredicted RBP13.65□□□□□ -0.22
CLK3-218ENST00000566926 RASA4O43374 803 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 FSBPO95073 299 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 CD27P26842 260 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 DRD3P35462 400 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 CCR5P51681 352 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 TAS2R40P59535 323 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 SNRPD1P62314 119 aaKnown RBP13.65□□□□□ -0.22
CLK3-218ENST00000566926 FOXK2Q01167 660 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 TEAD4Q15561 434 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 INO80DQ53TQ3 878 aaPredicted RBP13.65□□□□□ -0.22
CLK3-218ENST00000566926 PPP6R3Q5H9R7 873 aaPredicted RBP13.65□□□□□ -0.22
CLK3-218ENST00000566926 NCEH1Q6PIU2 408 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 RFX8Q6ZV50 586 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 LZTR1Q8N653 840 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 BIRC7Q96CA5 298 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 LRIG1Q96JA1 1093 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 KCTD15Q96SI1 283 aaPredicted RBP13.65□□□□□ -0.22
CLK3-218ENST00000566926 HEPHQ9BQS7 1158 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 TNKS2Q9H2K2 1166 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 HOMER3Q9NSC5 361 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 RXFP3Q9NSD7 469 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 GPATCH2LQ9NWQ4 482 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 SERGEFQ9UGK8 458 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 TBC1D3DA0A087WVF3 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3IA0A087WXS9 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3EA0A087X179 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3KA0A087X1G2 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3FA6NER0 549 aaPredicted RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 C4orf47A7E2U8 309 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3LB9A6J9 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 KPNA3O00505 521 aaPredicted RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 GSRP00390 522 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TUBBP07437 444 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3HP0C7X1 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 NUDT1P36639 197 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 AFF3P51826 1226 aaKnown RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 ADPRHP54922 357 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 RAD51Q06609 339 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 SERINC3Q13530 473 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 PDK2Q15119 407 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 DPYSL2Q16555 572 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 CA9Q16790 459 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 ZFYVE27Q5T4F4 411 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3GQ6DHY5 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3CQ6IPX1 549 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 IL27RAQ6UWB1 636 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 DPY19L3Q6ZPD9 716 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 TBC1D3Q8IZP1 549 aaPredicted RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 ZCCHC9Q8N567 271 aaKnown RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 SPATA4Q8NEY3 305 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 UBXN4Q92575 508 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 FAM131CQ96AQ9 280 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 SKA1Q96BD8 255 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 RUNDC3BQ96NL0 473 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 GTPBP2Q9BX10 602 aaKnown RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 NOL6Q9H6R4 1146 aaKnown RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 SARDHQ9UL12 918 aa13.64□□□□□ -0.23
CLK3-218ENST00000566926 FCF1Q9Y324 198 aaKnown RBP13.64□□□□□ -0.23
CLK3-218ENST00000566926 TMEM131Q92545 1883 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 LAMA1P25391 3075 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 A0A1W2PPC4 97 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 CDX4O14627 284 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 PLRG1O43660 514 aaKnown RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 OPHN1O60890 802 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 TJP3O95049 919 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 POP4O95707 220 aaKnown RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 CD160O95971 181 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 FGGP02679 453 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 KRT1P04264 644 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 PYGMP11217 842 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 ERCC2P18074 760 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 MARCKSL1P49006 195 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 CCNHP51946 323 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 CNTN1Q12860 1018 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 LONRF2Q1L5Z9 754 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 GLE1Q53GS7 698 aaKnown RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 ARSIQ5FYB1 569 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 NEK5Q6P3R8 708 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 CYP4V2Q6ZWL3 525 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 PRPF39Q86UA1 669 aaKnown RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 SLC13A5Q86YT5 568 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 CCDC50Q8IVM0 306 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 RYBPQ8N488 228 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 CHST14Q8NCH0 376 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 OR2AP1Q8NGE2 309 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 HSPH1Q92598 858 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 HMCESQ96FZ2 354 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 OSBPL1AQ9BXW6 950 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 FRMD8P1Q9BZ68 369 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 LRRC19Q9H756 370 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 PREBQ9HCU5 417 aa13.63□□□□□ -0.23
CLK3-218ENST00000566926 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLK3-218ENST00000566926 CWC15Q9P013 229 aaKnown RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 RCOR3Q9P2K3 495 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 HECAQ9UBI9 543 aaPredicted RBP13.63□□□□□ -0.23
CLK3-218ENST00000566926 DCDC2BA2VCK2 349 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms