RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SH2D3CQ8N5H7 860 aa30.95■■■□□ 2.55
CTCF-203ENST00000566078 LRRC39Q96DD0 335 aa30.95■■■□□ 2.55
CTCF-203ENST00000566078 SIGLEC10Q96LC7 697 aa30.95■■■□□ 2.55
CTCF-203ENST00000566078 ZIM3Q96PE6 472 aa30.95■■■□□ 2.55
CTCF-203ENST00000566078 TM6SF2Q9BZW4 377 aa30.95■■■□□ 2.55
CTCF-203ENST00000566078 CES1P23141 567 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 NSUN2Q08J23 767 aaKnown RBP eCLIP30.95■■■□□ 2.54
CTCF-203ENST00000566078 SLC14A2Q15849 920 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 ITPRIPL2Q3MIP1 535 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 CAPN12Q6ZSI9 719 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 UHMK1Q8TAS1 419 aaKnown RBP30.95■■■□□ 2.54
CTCF-203ENST00000566078 HLA-CQ95604 372 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 ZBTB9Q96C00 473 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 CIPCQ9C0C6 399 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 BRD9Q9H8M2 597 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 MAD1L1Q9Y6D9 718 aa30.95■■■□□ 2.54
CTCF-203ENST00000566078 ARNTLO00327 626 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 FAM193AP78312 1265 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 ALS2CLQ60I27 953 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 IQCKQ8N0W5 287 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 NSMCE3Q96MG7 304 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 LRRC4CQ9HCJ2 640 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 SYBUQ9NX95 663 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 ERVW-1Q9UQF0 538 aa30.94■■■□□ 2.54
CTCF-203ENST00000566078 SDR42E2A6NKP2 422 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 AP3B1O00203 1094 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 CRADDP78560 199 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 MESP2Q0VG99 397 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 C22orf39Q6P5X5 142 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 PALM2Q8IXS6 379 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 CYB5D2Q8WUJ1 264 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 SORCS1Q8WY21 1168 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 IFT43Q96FT9 208 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 ACBD3Q9H3P7 528 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 VPS37BQ9H9H4 285 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 BFARQ9NZS9 450 aa30.93■■■□□ 2.54
CTCF-203ENST00000566078 OPRD1P41143 372 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 DENND5AQ6IQ26 1287 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 CASC4Q6P4E1 433 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 NCEH1Q6PIU2 408 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 RANBP10Q6VN20 620 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 SRLQ86TD4 932 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 OR2W6PQ8NHA6 318 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 CFAP36Q96G28 342 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 FEM1CQ96JP0 617 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 RUFY1Q96T51 708 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 EBNA1BP2Q99848 306 aaKnown RBP30.92■■■□□ 2.54
CTCF-203ENST00000566078 TNKS2Q9H2K2 1166 aa30.92■■■□□ 2.54
CTCF-203ENST00000566078 IGSF6O95976 241 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 CHRNA4P43681 627 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 AAK1Q2M2I8 961 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 RALGPS1Q5JS13 557 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 DGKKQ5KSL6 1271 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 NAIF1Q69YI7 327 aaPredicted RBP30.91■■■□□ 2.54
CTCF-203ENST00000566078 SLC25A41Q8N5S1 370 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 STAMBPL1Q96FJ0 436 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 CEP44Q9C0F1 390 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 ZC3H7BQ9UGR2 993 aaKnown RBP30.91■■■□□ 2.54
CTCF-203ENST00000566078 SLCO3A1Q9UIG8 710 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 PRUNE2Q8WUY3 3088 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 ZNF821O75541 412 aaPredicted RBP30.91■■■□□ 2.54
CTCF-203ENST00000566078 ASLP04424 464 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 NUDT17P0C025 328 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 TPH1P17752 444 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 NPY2RP49146 381 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 GPX6P59796 221 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 CDK18Q07002 472 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 ACCSLQ4AC99 568 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 CERCAMQ5T4B2 595 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 NXPE3Q969Y0 559 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 ISG20Q96AZ6 181 aaKnown RBP30.91■■■□□ 2.54
CTCF-203ENST00000566078 MRGPRX3Q96LB0 322 aa30.91■■■□□ 2.54
CTCF-203ENST00000566078 PHF7Q9BWX1 381 aaPredicted RBP30.91■■■□□ 2.54
CTCF-203ENST00000566078 MYO10Q9HD67 2058 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 SHBGP04278 402 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 ATP5BP06576 529 aaKnown RBP30.9■■■□□ 2.54
CTCF-203ENST00000566078 ABHD2P08910 425 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 SSTR1P30872 391 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 AP1S1P61966 158 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 PHTF2Q8N3S3 785 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 OR6K2Q8NGY2 324 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 CHFRQ96EP1 664 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 SAMD15Q9P1V8 674 aa30.9■■■□□ 2.54
CTCF-203ENST00000566078 LOC285095A0A1B0GVY8 99 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 PALM2-AKAP2B1ALY0 433 aaPredicted RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 PRRT4C9JH25 899 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 DLDP09622 509 aaKnown RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 DLG2Q15700 870 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 SLC1A5Q15758 541 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 HABP4Q5JVS0 413 aaKnown RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 LRIG3Q6UXM1 1119 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 PCDH20Q8N6Y1 951 aaKnown RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 TERB1Q8NA31 727 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 OR2AP1Q8NGE2 309 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 CSGALNACT1Q8TDX6 532 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 TDRD1Q9BXT4 1180 aaKnown RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 IL22Q9GZX6 179 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 ELOVL2Q9NXB9 296 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 EVLQ9UI08 416 aaPredicted RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 RAI2Q9Y5P3 530 aa30.89■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms