RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 OR6K2Q8NGY2 324 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 BAP1Q92560 729 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 GDAP1L1Q96MZ0 367 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 KLF6Q99612 283 aaPredicted RBP19.01■□□□□ 0.63
CLN3-218ENST00000565688 SEPT11Q9NVA2 429 aaKnown RBP19.01■□□□□ 0.63
CLN3-218ENST00000565688 NCKIPSDQ9NZQ3 722 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 CSNK1G3Q9Y6M4 447 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 LRRC10BA6NIK2 292 aa19■□□□□ 0.63
CLN3-218ENST00000565688 RRP8O43159 456 aaKnown RBP19■□□□□ 0.63
CLN3-218ENST00000565688 BUB1O43683 1085 aa19■□□□□ 0.63
CLN3-218ENST00000565688 MT-CO3P00414 261 aa19■□□□□ 0.63
CLN3-218ENST00000565688 UGT2B4P06133 528 aa19■□□□□ 0.63
CLN3-218ENST00000565688 CCDC172P0C7W6 258 aa19■□□□□ 0.63
CLN3-218ENST00000565688 DESP17661 470 aa19■□□□□ 0.63
CLN3-218ENST00000565688 EPHB2P29323 1055 aa19■□□□□ 0.63
CLN3-218ENST00000565688 GKP32189 559 aa19■□□□□ 0.63
CLN3-218ENST00000565688 EIF2S3P41091 472 aaKnown RBP19■□□□□ 0.63
CLN3-218ENST00000565688 ABL2P42684 1182 aa19■□□□□ 0.63
CLN3-218ENST00000565688 ZNF143P52747 638 aaPredicted RBP19■□□□□ 0.63
CLN3-218ENST00000565688 YBEYP58557 167 aaPredicted RBP19■□□□□ 0.63
CLN3-218ENST00000565688 INO80DQ53TQ3 878 aaPredicted RBP19■□□□□ 0.63
CLN3-218ENST00000565688 ZNF542PQ5EBM4 170 aa19■□□□□ 0.63
CLN3-218ENST00000565688 DNAJC24Q6P3W2 148 aa19■□□□□ 0.63
CLN3-218ENST00000565688 MON1BQ7L1V2 547 aa19■□□□□ 0.63
CLN3-218ENST00000565688 TMC6Q7Z403 805 aa19■□□□□ 0.63
CLN3-218ENST00000565688 ZNF548Q8NEK5 533 aaPredicted RBP19■□□□□ 0.63
CLN3-218ENST00000565688 APOLD1Q96LR9 279 aa19■□□□□ 0.63
CLN3-218ENST00000565688 KLHL32Q96NJ5 620 aa19■□□□□ 0.63
CLN3-218ENST00000565688 GBP4Q96PP9 640 aa19■□□□□ 0.63
CLN3-218ENST00000565688 ERGIC2Q96RQ1 377 aa19■□□□□ 0.63
CLN3-218ENST00000565688 EPAS1Q99814 870 aa19■□□□□ 0.63
CLN3-218ENST00000565688 MAGEB5Q9BZ81 275 aa19■□□□□ 0.63
CLN3-218ENST00000565688 K7ESM1 405 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 AREL1O15033 823 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 OPA1O60313 960 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 TMCC1O94876 653 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 IGSF6O95976 241 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 CDK11BP21127 795 aaKnown RBP18.99■□□□□ 0.63
CLN3-218ENST00000565688 ANP32AP39687 249 aaKnown RBP18.99■□□□□ 0.63
CLN3-218ENST00000565688 PDE1CQ14123 709 aaPredicted RBP18.99■□□□□ 0.63
CLN3-218ENST00000565688 ACAP1Q15027 740 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 STX1AQ16623 288 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 PARP15Q460N3 678 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 SOWAHCQ53LP3 525 aaPredicted RBP18.99■□□□□ 0.63
CLN3-218ENST00000565688 SCYL2Q6P3W7 929 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 GDPD4Q6W3E5 623 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 LEKR1Q6ZMV7 388 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 SNIP1Q8TAD8 396 aaKnown RBP18.99■□□□□ 0.63
CLN3-218ENST00000565688 AGPAT1Q99943 283 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 CNPY3Q9BT09 278 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 C1QTNF7Q9BXJ2 289 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 TTYH3Q9C0H2 523 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 CATSPERBQ9H7T0 1116 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 DONSONQ9NYP3 566 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 MFHAS1Q9Y4C4 1052 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 MYLKQ15746 1914 aa18.99■□□□□ 0.63
CLN3-218ENST00000565688 CCP110O43303 1012 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 ACTN2P35609 894 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 PFN3P60673 137 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 PTK2BQ14289 1009 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 ATXN7L2Q5T6C5 722 aaPredicted RBP18.98■□□□□ 0.63
CLN3-218ENST00000565688 CDCP2Q5VXM1 449 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 ZCCHC8Q6NZY4 707 aaKnown RBP18.98■□□□□ 0.63
CLN3-218ENST00000565688 KDM7AQ6ZMT4 941 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 TTC7BQ86TV6 843 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 PYROXD2Q8N2H3 581 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 BTN2A2Q8WVV5 523 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 FGF11Q92914 225 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 VOPP1Q96AW1 172 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 MCEEQ96PE7 176 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 DEPDC7Q96QD5 511 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 ABCG4Q9H172 646 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 NOL6Q9H6R4 1146 aaKnown RBP18.98■□□□□ 0.63
CLN3-218ENST00000565688 DKK3Q9UBP4 350 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 GGT7Q9UJ14 662 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 ITM2BQ9Y287 266 aa18.98■□□□□ 0.63
CLN3-218ENST00000565688 TCRBV5S1A1TA0A578 114 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 WASH4PA8MWX3 477 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 TOR1BO14657 336 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 FGF10O15520 208 aaPredicted RBP18.97■□□□□ 0.63
CLN3-218ENST00000565688 SPINT1O43278 529 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 AQP9O43315 295 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 TLX3O43711 291 aaPredicted RBP18.97■□□□□ 0.63
CLN3-218ENST00000565688 BRINP1O60477 761 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 FERP16591 822 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 JUNDP17535 347 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 HTR7P34969 479 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 SUOXP51687 545 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 THOP1P52888 689 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 RHOAP61586 193 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 PPP1R2P3Q6NXS1 205 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 DCUN1D2Q6PH85 259 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 UMODL1-AS1Q8N2C9 162 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 CENPTQ96BT3 561 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 FZD10Q9ULW2 581 aa18.97■□□□□ 0.63
CLN3-218ENST00000565688 TDRD6O60522 2096 aaKnown RBP18.97■□□□□ 0.63
CLN3-218ENST00000565688 LY6G6EA0A0G2JKS1 128 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 RASA4BC9J798 803 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 GOLGA6L22H0YM25 854 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 TPP1O14773 563 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms