RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZFYVE27Q5T4F4 411 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 GDPD4Q6W3E5 623 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 LRRC49Q8IUZ0 686 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 ARHGAP12Q8IWW6 846 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 BBS5Q8N3I7 341 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 KCTD6Q8NC69 237 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 FAM71BQ8TC56 605 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 NSMCE1Q8WV22 266 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 FEM1CQ96JP0 617 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 SERAC1Q96JX3 654 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 ZNF599Q96NL3 588 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 PANX2Q96RD6 677 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 ORAI3Q9BRQ5 295 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 CPEB1Q9BZB8 566 aaKnown RBP13.59□□□□□ -0.23
CLK3-216ENST00000564468 PDFQ9HBH1 243 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 FSCN3Q9NQT6 498 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 IPO11Q9UI26 975 aaKnown RBP13.59□□□□□ -0.23
CLK3-216ENST00000564468 ANKRD6Q9Y2G4 727 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 ZZEF1O43149 2961 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 TDRD6O60522 2096 aaKnown RBP13.59□□□□□ -0.23
CLK3-216ENST00000564468 C16orf96A6NNT2 1141 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 PRAMEF26H0Y7S4 382 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 J3KR12 359 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 IPO7O95373 1038 aaKnown RBP13.58□□□□□ -0.24
CLK3-216ENST00000564468 SLC1A1P43005 524 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 MAGEA1P43355 309 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 CSNK1DP48730 415 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 SUOXP51687 545 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 TAS2R38P59533 333 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 PPP2CBP62714 309 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 PPP2CAP67775 309 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 NSUN2Q08J23 767 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLK3-216ENST00000564468 OVGP1Q12889 678 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 STAT4Q14765 748 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 SUZ12Q15022 739 aaKnown RBP13.58□□□□□ -0.24
CLK3-216ENST00000564468 TCEAL1Q15170 157 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 CYTH1Q15438 398 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 ATXN7L2Q5T6C5 722 aaPredicted RBP13.58□□□□□ -0.24
CLK3-216ENST00000564468 TXNRD3NBQ6F5E7 133 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 NAPEPLDQ6IQ20 393 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 KIAA1161Q6NSJ0 714 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 IQCHQ86VS3 1027 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 HORMAD1Q86X24 394 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 GAS2L3Q86XJ1 694 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 TMTC1Q8IUR5 882 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 MFSD2AQ8NA29 543 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 OR6K2Q8NGY2 324 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 FAM174AQ8TBP5 190 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 HCAR2Q8TDS4 363 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 TSC1Q92574 1164 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 SLC6A18Q96N87 628 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 KLHL32Q96NJ5 620 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 ZNF670Q9BS34 389 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 CINPQ9BW66 212 aaPredicted RBP13.58□□□□□ -0.24
CLK3-216ENST00000564468 GAREM1Q9H706 876 aa13.58□□□□□ -0.24
CLK3-216ENST00000564468 A0A1W2PQU0 124 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 TMEM110-MUSTN1A8MSY1 372 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 NEMP1O14524 444 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 TSPAN6O43657 245 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 UGT2B4P06133 528 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 CEACAM1P13688 526 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 XPAP23025 273 aaPredicted RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 MAT2AP31153 395 aaKnown RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 GJC1P36383 396 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 HSPA9P38646 679 aaKnown RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 RPS21P63220 83 aaKnown RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 COL9A2Q14055 689 aaPredicted RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 KIF19Q2TAC6 998 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 HLA-BQ31612 363 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 ODF2Q5BJF6 829 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 CFAP58Q5T655 872 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 PSAPL1Q6NUJ1 521 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 PARS2Q7L3T8 475 aaKnown RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 ATPAF2Q8N5M1 289 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 NPWQ8N729 165 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 ZNF641Q96N77 438 aaPredicted RBP13.57□□□□□ -0.24
CLK3-216ENST00000564468 TUBGCP5Q96RT8 1024 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 CALN1Q9BXU9 219 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 EBF2Q9HAK2 575 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 HAUS2Q9NVX0 235 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 DKK3Q9UBP4 350 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 LHX3Q9UBR4 397 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 SEPT3Q9UH03 358 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 FADS3Q9Y5Q0 445 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 LRRK1Q38SD2 2015 aa13.57□□□□□ -0.24
CLK3-216ENST00000564468 TMEM8BA6NDV4 472 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 GOLGA6L6A8MZA4 724 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 YKT6O15498 198 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 GJB3O75712 270 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 LCA5LO95447 670 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 HNRNPA2B1P22626 353 aaKnown RBP13.56□□□□□ -0.24
CLK3-216ENST00000564468 AKT2P31751 481 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 GKP32189 559 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 CTSKP43235 329 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 NOP2P46087 812 aaKnown RBP13.56□□□□□ -0.24
CLK3-216ENST00000564468 NOVA1P51513 510 aaKnown RBP13.56□□□□□ -0.24
CLK3-216ENST00000564468 ARSEP51690 589 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 DPYSL3Q14195 570 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 ZNF235Q14590 738 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 LBRQ14739 615 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms