RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 BNIPLQ7Z465 357 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 PRRT2Q7Z6L0 340 aaPredicted RBP13.36□□□□□ -0.27
CLN3-210ENST00000563874 OR9I1Q8NGQ6 314 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 HMGCLL1Q8TB92 370 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 LPGAT1Q92604 370 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 TEKT5Q96M29 485 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 GPR78Q96P69 363 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 LMCD1Q9NZU5 365 aa13.36□□□□□ -0.27
CLN3-210ENST00000563874 PIN4Q9Y237 131 aaKnown RBP13.36□□□□□ -0.27
CLN3-210ENST00000563874 PRORSD1PA6NEY8 169 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 DFFAO00273 331 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 CKMT2P17540 419 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 CDH2P19022 906 aaPredicted RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 KCNA5P22460 613 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 C1QTNF8P60827 252 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 RAB10P61026 200 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 TRIM25Q14258 630 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 CSHL1Q14406 222 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 HERC3Q15034 1050 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 KIAA0319Q5VV43 1072 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 ITPRIPL1Q6GPH6 555 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 NOTUMQ6P988 496 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 ALKAL1Q6UXT8 129 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 TMEM126BQ8IUX1 230 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 PPTC7Q8NI37 304 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 HEXDCQ8WVB3 486 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 PPWD1Q96BP3 646 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 ASB9Q96DX5 294 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 HNRNPABQ99729 332 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 SLC2A11Q9BYW1 496 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 NOL11Q9H8H0 719 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 OR12D3Q9UGF7 316 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 TIMM13Q9Y5L4 95 aaPredicted RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 CEPT1Q9Y6K0 416 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 ATP6AP2A0A1C7CYW4 349 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 SLCO1B7G3V0H7 640 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 PLOD2O00469 737 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 PFDN1O60925 122 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 TRMUO75648 421 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 ATP6AP2O75787 350 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 CSRP3P50461 194 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 SCNN1BP51168 640 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 CDH15P55291 814 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 LILRA4P59901 499 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 SEMA3BQ13214 749 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 NAPEPLDQ6IQ20 393 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 RWDD4Q6NW29 188 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 CHERPQ8IWX8 916 aaKnown RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 ZNF419Q96HQ0 510 aaPredicted RBP13.35□□□□□ -0.27
CLN3-210ENST00000563874 SLC2A13Q96QE2 648 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 TMEM79Q9BSE2 394 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 ADAMTS10Q9H324 1103 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 TMEM30AQ9NV96 361 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 PLK2Q9NYY3 685 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 NCKIPSDQ9NZQ3 722 aa13.35□□□□□ -0.27
CLN3-210ENST00000563874 ARHGAP10A1A4S6 786 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 ERI2A8K979 691 aaKnown RBP13.34□□□□□ -0.27
CLN3-210ENST00000563874 FBP2O00757 339 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 SLC22A2O15244 555 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 LRIG2O94898 1065 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 SLC1A2P43004 574 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 HSPA13P48723 471 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 GALK1P51570 392 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 SULT2A1Q06520 285 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 IKBKEQ14164 716 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 MYBPC3Q14896 1274 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 HERC6Q8IVU3 1022 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 HDAC11Q96DB2 347 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 PHF21BQ96EK2 531 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 KIFC1Q9BW19 673 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 TKTL2Q9H0I9 626 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 CACNA2D2Q9NY47 1150 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 FBXW11Q9UKB1 542 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 ARNTP27540 789 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 PRAMEP78395 509 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 FASTKQ14296 549 aaKnown RBP13.34□□□□□ -0.27
CLN3-210ENST00000563874 RFTN1Q14699 578 aaPredicted RBP13.34□□□□□ -0.27
CLN3-210ENST00000563874 ZNF470Q6ECI4 717 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 KRT80Q6KB66 452 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 NUP93Q8N1F7 819 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 DDI1Q8WTU0 396 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 SLCO4A1Q96BD0 722 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 ZNF560Q96MR9 790 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 RHOBTB2Q9BYZ6 727 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 SIK2Q9H0K1 926 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 MRPL46Q9H2W6 279 aaKnown RBP13.34□□□□□ -0.27
CLN3-210ENST00000563874 TRHDEQ9UKU6 1024 aa13.34□□□□□ -0.27
CLN3-210ENST00000563874 ASB14A6NK59 587 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 TIPRLO75663 272 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 CD4P01730 458 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 ADSLP30566 484 aaPredicted RBP13.33□□□□□ -0.27
CLN3-210ENST00000563874 CHRNA4P43681 627 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 NME5P56597 212 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 CCNA1P78396 465 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 GALNT2Q10471 571 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 SEPT6Q14141 434 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 FRG1Q14331 258 aaKnown RBP13.33□□□□□ -0.27
CLN3-210ENST00000563874 PRPSAP1Q14558 356 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 RBM20Q5T481 1227 aaKnown RBP13.33□□□□□ -0.27
CLN3-210ENST00000563874 REP15Q6BDI9 236 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms