RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CNGB3Q9NQW8 809 aa13.46□□□□□ -0.25
CLK3-206ENST00000562078 SETD4Q9NVD3 440 aa13.46□□□□□ -0.25
CLK3-206ENST00000562078 CYTH4Q9UIA0 394 aa13.46□□□□□ -0.25
CLK3-206ENST00000562078 PRPF19Q9UMS4 504 aaKnown RBP13.46□□□□□ -0.25
CLK3-206ENST00000562078 TRIM64BA6NI03 449 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 SPAG6O75602 509 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 KRT37O76014 449 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 ITGAVP06756 1048 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 CLK3P49761 638 aaKnown RBP13.46□□□□□ -0.26
CLK3-206ENST00000562078 DYNLT1P63172 113 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 MBLAC2Q68D91 279 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 FRA10AC1Q70Z53 315 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 ARCQ7LC44 396 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 SLC38A6Q8IZM9 456 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 CD99L2Q8TCZ2 262 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 C1orf50Q9BV19 199 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 STN1Q9H668 368 aaKnown RBP13.46□□□□□ -0.26
CLK3-206ENST00000562078 ASB7Q9H672 318 aa13.46□□□□□ -0.26
CLK3-206ENST00000562078 DUS2Q9NX74 493 aaKnown RBP13.46□□□□□ -0.26
CLK3-206ENST00000562078 ZNF195O14628 629 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 KMOO15229 486 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 MSI1O43347 362 aaKnown RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 TIMM44O43615 452 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 CLPXO76031 633 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 GSRP00390 522 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 CXCR2P25025 360 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 RPL22P35268 128 aaKnown RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 BASP1P80723 227 aaKnown RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 CAP1Q01518 475 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 IFITM3Q01628 133 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 DPYSQ14117 519 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 NEDD8Q15843 81 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 TTC23LQ6PF05 361 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 SNX32Q86XE0 403 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 ADGRF2Q8IZF7 708 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 SLC4A11Q8NBS3 891 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 TRPV1Q8NER1 839 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 SUN5Q8TC36 379 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 FEM1CQ96JP0 617 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 ADPGKQ9BRR6 497 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 ELOVL4Q9GZR5 314 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 DNAJC28Q9NX36 388 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 PCDHGA8Q9Y5G5 932 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 TTC34A8MYJ7 566 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 MED7O43513 233 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 BCAS2O75934 225 aaPredicted RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 BCL10O95999 233 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 IGHA2P01877 340 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 FGF3P11487 239 aaPredicted RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 CYBAP13498 195 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 ENO3P13929 434 aaPredicted RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 CKMT2P17540 419 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 CCNA2P20248 432 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 GRK2P25098 689 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 PTPN11Q06124 597 aaPredicted RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 NHSL2Q5HYW2 709 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 MROH9Q5TGP6 573 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 TXNRD3NBQ6F5E7 133 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 C4orf22Q6V702 233 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 CHST15Q7LFX5 561 aaPredicted RBP13.45□□□□□ -0.26
CLK3-206ENST00000562078 KIAA2013Q8IYS2 634 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 SPERTQ8NA61 448 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 KYQ8NBH2 561 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 DLG3Q92796 817 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 HPDLQ96IR7 371 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 SORT1Q99523 831 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 HOXD1Q9GZZ0 328 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 SNX13Q9Y5W8 968 aa13.45□□□□□ -0.26
CLK3-206ENST00000562078 H0YJX3 145 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 F2P00734 622 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 C1QAP02745 245 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 ELNP15502 786 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 MATN1P21941 496 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 FOXD4Q12950 439 aaPredicted RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 TRIM32Q13049 653 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 FSCN1Q16658 493 aaKnown RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 C16orf89Q6UX73 402 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 DPH6Q7L8W6 267 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 TAS2R42Q7RTR8 314 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 GOLM1Q8NBJ4 401 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 NKD2Q969F2 451 aaPredicted RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 ZNF486Q96H40 463 aaPredicted RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 CPXM1Q96SM3 734 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 SCUBE2Q9NQ36 999 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 QPCTLQ9NXS2 382 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 Q9Y3F1 56 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 ACOT8O14734 319 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 DUSP11O75319 330 aaKnown RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 CILPO75339 1184 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 PRKACBP22694 351 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 TGM1P22735 817 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 TAP1Q03518 808 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 MFSD10Q14728 455 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 FSCBQ5H9T9 825 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 ATAD3BQ5T9A4 648 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 FAM117BQ6P1L5 589 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 SPOCD1Q6ZMY3 1216 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 KCTD8Q6ZWB6 473 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 RCOR2Q8IZ40 523 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 TFAP2CQ92754 450 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms