RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PNMA2Q9UL42 364 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DNM3Q9UQ16 869 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 RABGAP1Q9Y3P9 1069 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 NFASCO94856 1347 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ADGRA3Q8IWK6 1321 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PDCD11Q14690 1871 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 PLXNA1Q9UIW2 1896 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 OTOFQ9HC10 1997 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FNDC1Q4ZHG4 1894 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 SMIM35A0A1B0GVV1 85 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SERINC4A6NH21 518 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 CCT8L1PA6NM43 557 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ZNF891A8MT65 544 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 TISP43B9A030 160 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ANKRD63C9JTQ0 380 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 POLRMTO00411 1230 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 PODXLO00592 558 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PPIP5K2O43314 1243 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 RIPK2O43353 540 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 KIF1CO43896 1103 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 SNX3O60493 162 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 CTNND1O60716 968 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 TCEA3O75764 348 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 OAZ2O95190 189 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 LYPLA2O95372 231 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ATP6V1G2O95670 118 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 NDUFB10O96000 172 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 FGBP02675 491 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SHBGP04278 402 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 CYP1A2P05177 515 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ABHD2P08910 425 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TMEM191BP0C7N4 346 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 EBLN1P0CF75 366 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TRIM49P0CI25 452 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TRIM49CP0CI26 452 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 GZMAP12544 262 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 RARGP13631 454 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 EEF2P13639 858 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 TMOD1P28289 359 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SLC8A1P32418 973 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ELF1P32519 619 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SLC16A2P36021 539 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 MAP2K2P36507 400 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SKIV2L2P42285 1042 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 MARCKSL1P49006 195 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PEX5P50542 639 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PDE6CP51160 858 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PRELPP51888 382 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 MNAT1P51948 309 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PMS2P54278 862 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 NCALDP61601 193 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SNRPFP62306 86 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 SETQ01105 290 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 CREMQ03060 361 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ICA1Q05084 483 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PTP4A2Q12974 167 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TRAF1Q13077 416 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PICALMQ13492 652 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SERINC3Q13530 473 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ACVR2BQ13705 512 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PTK6Q13882 451 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SEMA3AQ14563 771 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 COG2Q14746 738 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 HLXQ14774 488 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 SLMAPQ14BN4 828 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 DAZAP2Q15038 168 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 CNGA2Q16280 664 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 UGT8Q16880 541 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 GALNTL6Q49A17 601 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 CT83Q5H943 113 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 C1orf220Q5T0J3 134 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 UBAP2Q5T6F2 1119 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 RNF187Q5TA31 235 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 SEL1L2Q5TEA6 688 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SYDE2Q5VT97 1194 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 APOBEC3HQ6NTF7 200 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 CDC42EP5Q6NZY7 148 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TTC27Q6P3X3 843 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 VSTM1Q6UX27 236 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 INTS8Q75QN2 995 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 TRMT10CQ7L0Y3 403 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 MIGA2Q7L4E1 593 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 NIPA1Q7RTP0 329 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SLC29A4Q7RTT9 530 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ZNF720Q7Z2F6 126 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 DNAAF5Q86Y56 855 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PALB2Q86YC2 1186 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 FAM71AQ8IYT1 594 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 RIBC1Q8N443 379 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 UBL4BQ8N7F7 174 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 GBP7Q8N8V2 638 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 MAB21L3Q8N8X9 362 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 CCHCR1Q8TD31 782 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SLC20A1Q8WUM9 679 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PSPC1Q8WXF1 523 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 SHC3Q92529 594 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 KRT35Q92764 455 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ART4Q93070 314 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TEKT1Q969V4 418 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 C18orf8Q96DM3 657 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms