RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CNTN1Q12860 1018 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 SLC10A2Q12908 348 aaPredicted RBP13.17□□□□□ -0.3
NEDD8-208ENST00000560427 LPAL2Q16609 132 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 PIP5KL1Q5T9C9 394 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 KAZNQ674X7 775 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 ALG1LQ6GMV1 187 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 SYT12Q8IV01 421 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 TMEFF1Q8IYR6 380 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 CCNYQ8ND76 341 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 OR6K2Q8NGY2 324 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 DNASE2BQ8WZ79 361 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 SPOCK2Q92563 424 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 P3H4Q92791 437 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 ARRDC3Q96B67 414 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 EXOC2Q96KP1 924 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 HSPA12BQ96MM6 686 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 NUDCD1Q96RS6 583 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 OSBPL8Q9BZF1 889 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 POLR1EQ9GZS1 481 aaKnown RBP13.17□□□□□ -0.3
NEDD8-208ENST00000560427 KCNF1Q9H3M0 494 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 VPS45Q9NRW7 570 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 EVLQ9UI08 416 aaPredicted RBP13.17□□□□□ -0.3
NEDD8-208ENST00000560427 MYO15AQ9UKN7 3530 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 OTOGLQ3ZCN5 2332 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.16□□□□□ -0.3
NEDD8-208ENST00000560427 TSPAN11A1L157 253 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 MEI4A8MW99 385 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 HACD1B0YJ81 288 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 DDX3YO15523 660 aaKnown RBP13.16□□□□□ -0.3
NEDD8-208ENST00000560427 SOCS5O75159 536 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 NEBLO76041 1014 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 MAP3K6O95382 1288 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 UGT2B4P06133 528 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 ADRB3P13945 408 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 CCNB1P14635 433 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 MPLP40238 635 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 PTGER3P43115 390 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 CREB5Q02930 508 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 PLA2G2CQ5R387 149 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 KIAA0895LQ68EN5 471 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 FBXL19Q6PCT2 694 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 NCEH1Q6PIU2 408 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 BRAT1Q6PJG6 821 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.16□□□□□ -0.3
NEDD8-208ENST00000560427 SRLQ86TD4 932 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 TRIM69Q86WT6 500 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 SLC41A1Q8IVJ1 513 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 OR14C36Q8NHC7 312 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 CEP76Q8TAP6 659 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 VOPP1Q96AW1 172 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 HINFPQ9BQA5 517 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.16□□□□□ -0.3
NEDD8-208ENST00000560427 PIEZO1Q92508 2521 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 GPR179Q6PRD1 2367 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 SPAG17Q6Q759 2223 aa13.16□□□□□ -0.3
NEDD8-208ENST00000560427 GOLGA6L9A6NEM1 432 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 C16orf96A6NNT2 1141 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 INSIG1O15503 277 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 PYGMP11217 842 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 GNSP15586 552 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 CA4P22748 312 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 MSNP26038 577 aaKnown RBP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 RGRP47804 291 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 SCNN1BP51168 640 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 METAP1P53582 386 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 BCL2L1Q07817 233 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 XRCC4Q13426 336 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 PRKD1Q15139 912 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 RPS6KA1Q15418 735 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 CSRP2Q16527 193 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 POM121L1PQ3SYA9 428 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 CFAP58Q5T655 872 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 MEI1Q5TIA1 1274 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 CCDC181Q5TID7 509 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 DCAF12L1Q5VU92 463 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 PARS2Q7L3T8 475 aaKnown RBP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 TTC13Q8NBP0 860 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 TFB1MQ8WVM0 346 aaKnown RBP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 ECHDC3Q96DC8 303 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 KLHL32Q96NJ5 620 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 VAT1Q99536 393 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 LGMNQ99538 433 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 IL12RB2Q99665 862 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 FERMT1Q9BQL6 677 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 CARD9Q9H257 536 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 SUV39H2Q9H5I1 410 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 C6orf106Q9H6K1 298 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 SCUBE2Q9NQ36 999 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 RBM22Q9NW64 420 aaKnown RBP eCLIP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 PILRBQ9UKJ0 227 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 PACSIN2Q9UNF0 486 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-208ENST00000560427 DMDP11532 3685 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 NUP205Q92621 2012 aa13.15□□□□□ -0.3
NEDD8-208ENST00000560427 PRR5-ARHGAP8B1AHC4 643 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 MUSKO15146 869 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 LATO43561 262 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 TSPAN6O43657 245 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 PIGNO95427 931 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 IGHV4-34P06331 123 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 ZNF806P0C7X5 589 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms