RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 SKA1Q96BD8 255 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 KLHL32Q96NJ5 620 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 RNF157Q96PX1 679 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 TUBGCP5Q96RT8 1024 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 TM9SF3Q9HD45 589 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 RXFP3Q9NSD7 469 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 DLL3Q9NYJ7 618 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 DMTF1Q9Y222 760 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 ALG6Q9Y672 507 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 GVINP1Q7Z2Y8 2422 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 C16orf96A6NNT2 1141 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 RNF103O00237 685 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 PJA2O43164 708 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 AP1G1O43747 822 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 MFSD11O43934 449 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 MAFKO60675 156 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 RNGTTO60942 597 aaKnown RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 PCDH8O95206 1070 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 KRT1P04264 644 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 UGT2B4P06133 528 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 TNNT1P13805 278 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 ZFXP17010 805 aaPredicted RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 MX2P20592 715 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 GKP32189 559 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 MAPK8P45983 427 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 NAP1L1P55209 391 aaKnown RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 TAS2R38P59533 333 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 RACK1P63244 317 aaKnown RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 GALNT2Q10471 571 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 ZNF235Q14590 738 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 IFI16Q16666 785 aaKnown RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 SETMARQ53H47 684 aaPredicted RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 SLC45A4Q5BKX6 768 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 PARS2Q7L3T8 475 aaKnown RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 ADAT2Q7Z6V5 191 aaKnown RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 DAAM2Q86T65 1068 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 SRLQ86TD4 932 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 TP53INP2Q8IXH6 220 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 RMDN1Q96DB5 314 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 EXOC2Q96KP1 924 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 ZNF641Q96N77 438 aaPredicted RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 ZNF830Q96NB3 372 aaPredicted RBP12.65□□□□□ -0.38
SLIRP-209ENST00000557342 PSKH2Q96QS6 385 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 ORAI3Q9BRQ5 295 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 HAUS2Q9NVX0 235 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 DKK3Q9UBP4 350 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 HYOU1Q9Y4L1 999 aa12.65□□□□□ -0.38
SLIRP-209ENST00000557342 CACNA1EQ15878 2313 aa12.65□□□□□ -0.39
SLIRP-209ENST00000557342 GOLGA6L3A6NEY3 463 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 C4orf47A7E2U8 309 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 CDX4O14627 284 aaPredicted RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 TSPAN6O43657 245 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 XPAP23025 273 aaPredicted RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 SERPINA4P29622 427 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 GARSP41250 739 aaKnown RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 SUOXP51687 545 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 PPP2CBP62714 309 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 RPS21P63220 83 aaKnown RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 PPP2CAP67775 309 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 SLC10A7Q0GE19 358 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 KIF5AQ12840 1032 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 GRIK2Q13002 908 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 RALGPS1Q5JS13 557 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 CFAP58Q5T655 872 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 MARC1Q5VT66 337 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 NAPEPLDQ6IQ20 393 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 KIAA1161Q6NSJ0 714 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 TTC7BQ86TV6 843 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 HORMAD1Q86X24 394 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 PQLC3Q8N755 202 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 TSEN2Q8NCE0 465 aaKnown RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 ACRBPQ8NEB7 543 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 CCDC112Q8NEF3 446 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 TPCN2Q8NHX9 752 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 FATE1Q969F0 183 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 FEM1CQ96JP0 617 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 SERAC1Q96JX3 654 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 GTPBP2Q9BX10 602 aaKnown RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 SUV39H2Q9H5I1 410 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 ATP13A3Q9H7F0 1226 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 AASDHPPTQ9NRN7 309 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 TFR2Q9UP52 801 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 REXO2Q9Y3B8 237 aaKnown RBP12.64□□□□□ -0.39
SLIRP-209ENST00000557342 FADS3Q9Y5Q0 445 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 LRRK1Q38SD2 2015 aa12.64□□□□□ -0.39
SLIRP-209ENST00000557342 ZNF292O60281 2723 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 A0A1W2PQU0 124 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 RCCD1A6NED2 376 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 C3orf70A6NLC5 250 aaPredicted RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 PRAMEF26H0Y7S4 382 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 NEMP1O14524 444 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 APOL1O14791 398 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 INSIG1O15503 277 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 MAGEC1O60732 1142 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 OPHN1O60890 802 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 CER1O95813 267 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 PEX11BO96011 259 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 CCNCP24863 283 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms