RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 NETO1Q8TDF5 533 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TCEAL3Q969E4 200 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 FATE1Q969F0 183 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 VOPP1Q96AW1 172 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 RNF25Q96BH1 459 aaPredicted RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 ZNF641Q96N77 438 aaPredicted RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TSGA13Q96PP4 275 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TUBGCP5Q96RT8 1024 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 GRPEL1Q9HAV7 217 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 CAPN10Q9HC96 672 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 DKK3Q9UBP4 350 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 ANKRD36A6QL64 1941 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 ARHGAP33O14559 1287 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 INSIG1O15503 277 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 TSPAN6O43657 245 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 MFSD11O43934 449 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 RNGTTO60942 597 aaKnown RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 PCDH8O95206 1070 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ZRANB2O95218 330 aaKnown RBP eCLIP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 PEX11BO96011 259 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 KRT1P04264 644 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 UGT2B4P06133 528 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ENGP17813 658 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 HSPA9P38646 679 aaKnown RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 MAPK8P45983 427 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 SUOXP51687 545 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ATXN3P54252 364 aaPredicted RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 RACK1P63244 317 aaKnown RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 SLC10A7Q0GE19 358 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 TEAD4Q15561 434 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 RSPO4Q2I0M5 234 aaPredicted RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 SLC9A4Q6AI14 798 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 PARS2Q7L3T8 475 aaKnown RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ZSCAN30Q86W11 494 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 LRRC8AQ8IWT6 810 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 KATNAL2Q8IYT4 538 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ZCCHC9Q8N567 271 aaKnown RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 TEX26Q8N6G2 289 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 FEM1CQ96JP0 617 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 EXOC2Q96KP1 924 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 KLHL32Q96NJ5 620 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ORAI3Q9BRQ5 295 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 EDEM2Q9BV94 578 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ZDHHC5Q9C0B5 715 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 SUV39H2Q9H5I1 410 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 ATP13A3Q9H7F0 1226 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 EBF2Q9HAK2 575 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 TMEM9BQ9NQ34 198 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 RXFP3Q9NSD7 469 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 HAUS2Q9NVX0 235 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 CDV3Q9UKY7 258 aaKnown RBP10.82□□□□□ -0.68
LINC00239-201ENST00000556973 DMTF1Q9Y222 760 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 PCDHA3Q9Y5H8 950 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 FADS3Q9Y5Q0 445 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 NUMA1Q14980 2115 aa10.82□□□□□ -0.68
LINC00239-201ENST00000556973 OTOGLQ3ZCN5 2332 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 A0A1W2PQU0 124 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 CDX4O14627 284 aaPredicted RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 APOL1O14791 398 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 MATN3O15232 486 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 ARHGAP6O43182 974 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SERPINA4P29622 427 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 CDKN2BP42772 138 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RGRP47804 291 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 ID4P47928 161 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 GRIA4P48058 902 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SCNN1BP51168 640 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RPS21P63220 83 aaKnown RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 GBE1Q04446 702 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 BCL2L1Q07817 233 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SLC10A2Q12908 348 aaPredicted RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 TFDP2Q14188 446 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 ZNF235Q14590 738 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 TAZQ16635 292 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SETMARQ53H47 684 aaPredicted RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 TFDP3Q5H9I0 405 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RALGPS1Q5JS13 557 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 STPG1Q5TH74 334 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 KIAA1161Q6NSJ0 714 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 MFSD7Q6UXD7 560 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SPOCD1Q6ZMY3 1216 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 BZW1Q7L1Q6 419 aaKnown RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RFX6Q8HWS3 928 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SYCE1Q8N0S2 351 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RNF10Q8N5U6 811 aaKnown RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 PLD5Q8N7P1 536 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 CCNYQ8ND76 341 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 EXD1Q8NHP7 514 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 MAML1Q92585 1016 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 SKA1Q96BD8 255 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 HDAC11Q96DB2 347 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RBM41Q96IZ5 413 aaKnown RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 ZNF830Q96NB3 372 aaPredicted RBP10.81□□□□□ -0.68
LINC00239-201ENST00000556973 NUDCD1Q96RS6 583 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 RTKNQ9BST9 563 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 DESI2Q9BSY9 194 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 GOLPH3Q9H4A6 298 aa10.81□□□□□ -0.68
LINC00239-201ENST00000556973 TM9SF3Q9HD45 589 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms