RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ZDHHC6	Q9H6R6	413 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	SYNDIG1	Q9H7V2	258 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	GULP1	Q9UBP9	304 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	CTNND2	Q9UQB3	1225 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	FCF1	Q9Y324	198 aa	Known RBP	12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	TMX2-CTNND1	H3BSU7	103 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	NTN3	O00634	580 aa	Predicted RBP	12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	PLD2	O14939	933 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	CASC3	O15234	703 aa	Known RBP	12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	TSHR	P16473	764 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	BMP6	P22004	513 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	SLC5A2	P31639	672 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	ABL2	P42684	1182 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	ARF5	P84085	180 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	GNA12	Q03113	381 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	EIF3I	Q13347	325 aa	Known RBP	12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	LINC00303	Q3SY05	128 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	SLC25A52	Q3SY17	297 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	SMYD5	Q6GMV2	418 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	RAB11FIP2	Q7L804	512 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	TTC7B	Q86TV6	843 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	CREBRF	Q8IUR6	639 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	SCG3	Q8WXD2	468 aa	Known RBP	12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	SHC3	Q92529	594 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	ARHGEF26	Q96DR7	871 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	LIN37	Q96GY3	246 aa	Predicted RBP	12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	TBCB	Q99426	244 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	ARHGAP9	Q9BRR9	750 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	LRRC61	Q9BV99	259 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	TM6SF2	Q9BZW4	377 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZYG11B	Q9C0D3	744 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	CLPB	Q9H078	707 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	TMPRSS4	Q9NRS4	437 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	APEX2	Q9UBZ4	518 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	DOLK	Q9UPQ8	538 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	PCDHGA7	Q9Y5G6	932 aa		12.86	□□□□□ -0.35
SHMT2-223	ENST00000556689	TRPM6	Q9BX84	2022 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	CXorf51A	A0A1B0GTR3	108 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	TOR1B	O14657	336 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	NOBOX	O60393	691 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	POP4	O95707	220 aa	Known RBP	12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	GK	P32189	559 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	UGT1A5	P35504	534 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	EIF4A3	P38919	411 aa	Known RBP	12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	BLK	P51451	505 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	PDX1	P52945	283 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	INHBC	P55103	352 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	APBA1	Q02410	837 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	PPARD	Q03181	441 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	PAK1	Q13153	545 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	ARTN	Q5T4W7	220 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	LVRN	Q6Q4G3	990 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	GBP6	Q6ZN66	633 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	JAML	Q86YT9	394 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	SGF29	Q96ES7	293 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	GBP4	Q96PP9	640 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	C1QTNF7	Q9BXJ2	289 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	STRADB	Q9C0K7	418 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	EPB41L5	Q9HCM4	733 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	PPARGC1A	Q9UBK2	798 aa	Known RBP	12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZNF212	Q9UDV6	495 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	GGT7	Q9UJ14	662 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	PNMA8B	Q9ULN7	279 aa	Predicted RBP	12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	ITM2B	Q9Y287	266 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	ACTL7A	Q9Y615	435 aa		12.85	□□□□□ -0.35
SHMT2-223	ENST00000556689	KRIT1	O00522	736 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	TM7SF2	O76062	418 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	CD160	O95971	181 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	ITGB2	P05107	769 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	SFTPC	P11686	197 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	CTSE	P14091	401 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	CLCN1	P35523	988 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	ACVRL1	P37023	503 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	ETFB	P38117	255 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	GEMIN4	P57678	1058 aa	Known RBP	12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	SNRPD1	P62314	119 aa	Known RBP	12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	CCL7	P80098	99 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	MORC3	Q14149	939 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	POLD3	Q15054	466 aa	Predicted RBP	12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	ELOC	Q15369	112 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	TGIF1	Q15583	401 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	EXOC3L4	Q17RC7	722 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	MYLK3	Q32MK0	819 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	MACC1	Q6ZN28	852 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	ATG14	Q6ZNE5	492 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	B3GNT8	Q7Z7M8	397 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	SLC47A2	Q86VL8	602 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	VPS36	Q86VN1	386 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	DRC7	Q8IY82	874 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	FSTL5	Q8N475	847 aa	Predicted RBP	12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	ARL10	Q8N8L6	244 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	TMEM35B	Q8NCS4	154 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	OR6K2	Q8NGY2	324 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	EXTL1	Q92935	676 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	C18orf8	Q96DM3	657 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	KLHL32	Q96NJ5	620 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	GFM1	Q96RP9	751 aa	Known RBP	12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	OSBPL1A	Q9BXW6	950 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	TRIM4	Q9C037	500 aa		12.84	□□□□□ -0.35
SHMT2-223	ENST00000556689	PDCL3	Q9H2J4	239 aa		12.84	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms