RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DTNAQ9Y4J8 743 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 AK5Q9Y6K8 562 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 DENND4CQ5VZ89 1909 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 A0A088AWK7 358 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 SLC38A8A6NNN8 435 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 MATN2O00339 956 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 DNALI1O14645 258 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CASQ2O14958 399 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 SERPINB7O75635 380 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 PDGFBP01127 241 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 F11P03951 625 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CD19P15391 556 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 BGNP21810 368 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 FCARP24071 287 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 SERPINB6P35237 376 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 VIPR2P41587 438 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 MAGEA11P43364 429 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF132P52740 706 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 NR1H2P55055 460 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 RAB15P59190 212 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 NAA20P61599 178 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TDGQ13569 410 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 FASTKD3Q14CZ7 662 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 VEPH1Q14D04 833 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TLR1Q15399 786 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TAF12Q16514 161 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CCNG2Q16589 344 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 EFHC2Q5JST6 749 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 MFSD4BQ5TF39 518 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ACAD10Q6JQN1 1059 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ITIH5Q86UX2 942 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF677Q86XU0 584 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ERI1Q8IV48 349 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 AHI1Q8N157 1196 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ZSCAN18Q8TBC5 510 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 SLC2A14Q8TDB8 520 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 GIPC3Q8TF64 312 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TFAP2BQ92481 460 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ASIC4Q96FT7 647 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM176AQ96HP8 235 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TNIP3Q96KP6 325 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 HEXIM2Q96MH2 286 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ASB16Q96NS5 453 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 HNRNPABQ99729 332 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 HERPUD2Q9BSE4 406 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 WWP1Q9H0M0 922 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 C12orf65Q9H3J6 166 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF696Q9H7X3 374 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TUBA8Q9NY65 449 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 GDE1Q9NZC3 331 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 IGSF9Q9P2J2 1179 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 FETUBQ9UGM5 382 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 SOX13Q9UN79 622 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 GOLGA8RI6L899 631 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ALOX15BO15296 676 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 OBSL1O75147 1896 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 MICAL2O94851 1124 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CD48P09326 243 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 PHBP35232 272 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 VCPP55072 806 aaKnown RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 RPL10AP62906 217 aaKnown RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 RELAQ04206 551 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 BTKQ06187 659 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CCNIQ14094 377 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CLEC16AQ2KHT3 1053 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 TXNDC8Q6A555 127 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 HFE2Q6ZVN8 426 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 FAM35AQ86V20 835 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 UNC93AQ86WB7 457 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 SLC4A11Q8NBS3 891 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 LEMD2Q8NC56 503 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ZMIZ2Q8NF64 920 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 SCAMP5Q8TAC9 235 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 TTC17Q96AE7 1141 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 RSPRY1Q96DX4 576 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 BIRC8Q96P09 236 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 LRRC3BQ96PB8 259 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 MED10Q9BTT4 135 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 NT5C1AQ9BXI3 368 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 SLC46A2Q9BY10 475 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 SMG9Q9H0W8 520 aaKnown RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ANAPC1Q9H1A4 1944 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 UBAP1Q9NZ09 502 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 RSL24D1Q9UHA3 163 aaKnown RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 FADS3Q9Y5Q0 445 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ZFP37Q9Y6Q3 630 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 MUC6Q6W4X9 2439 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 COL4A3Q01955 1670 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CAPN8A6NHC0 703 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 MEI4A8MW99 385 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 H3BSA7 217 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 FBP2O00757 339 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CCNT2O60583 730 aaKnown RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 GPR37L1O60883 481 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ATP5BP06576 529 aaKnown RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 DHRS4L1P0CG22 281 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CSH1P0DML2 217 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CSH2P0DML3 217 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 UNGP13051 313 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CDH2P19022 906 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms