RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FRMD8Q9BZ67 464 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-215ENST00000552823 SMG9Q9H0W8 520 aaKnown RBP5.65□□□□□ -1.5
LIMA1-215ENST00000552823 RNF208Q9H0X6 261 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 MUC3BQ9H195 1237 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 LRMDAQ9H2I8 198 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 TLE6Q9H808 572 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 SLC24A3Q9HC58 644 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 HMX1Q9NP08 348 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-215ENST00000552823 CREBZFQ9NS37 354 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 ADA2Q9NZK5 511 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 ADAM28Q9UKQ2 775 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 C15orf41Q9Y2V0 281 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 ATG2BQ96BY7 2078 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 A0A1W2PQ45 241 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 A0A1W2PQY0 241 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ZBBXA8MT70 800 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 IQCF5A8MTL0 148 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ENPP3O14638 875 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 NBNO60934 754 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 TBX10O75333 385 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CALB2P22676 271 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CES1P23141 567 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ALDH7A1P49419 539 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 LIMK2P53671 638 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 DLG1Q12959 904 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 IHHQ14623 411 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 GRAMD1BQ3KR37 738 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PLA2G4EQ3MJ16 856 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PREPLQ4J6C6 727 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SNX30Q5VWJ9 437 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 LPCAT4Q643R3 524 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 FUT10Q6P4F1 479 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 FAM171BQ6P995 826 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 LRRC8DQ7L1W4 858 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 IFNEQ86WN2 208 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MFSD6LQ8IWD5 586 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 NT5C3BQ969T7 300 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 FAXDC2Q96IV6 333 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MRGPRX2Q96LB1 330 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF570Q96NI8 536 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 NPAS2Q99743 824 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 POMKQ9H5K3 350 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 RNPEPL1Q9HAU8 725 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 FBRSL1Q9HCM7 1045 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CASS4Q9NQ75 786 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CYLDQ9NQC7 956 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SAR1AQ9NR31 198 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SIRPGQ9P1W8 387 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 TAGLN3Q9UI15 199 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 BTRCQ9Y297 605 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 FAM155AB1AL88 458 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PRRG1O14668 218 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MUSKO15146 869 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ZBTB14O43829 449 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 DLX3O60479 287 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ATP5HO75947 161 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ELF1P32519 619 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MAGEA3P43357 314 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 RGRP47804 291 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CD151P48509 253 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MGAT3Q09327 533 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PPP1R3AQ16821 1122 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 TCTN1Q2MV58 587 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CTC1Q2NKJ3 1217 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MMEL1Q495T6 779 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PCID2Q5JVF3 399 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ATXN7L2Q5T6C5 722 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ARMC12Q5T9G4 340 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 TRIM67Q6ZTA4 783 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MON1AQ86VX9 555 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ZC3HC1Q86WB0 502 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 DDIASQ8IXT1 998 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 GALNT4Q8N4A0 578 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 UCMAQ8WVF2 138 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SREK1Q8WXA9 508 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 NTAN1Q96AB6 310 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SKA1Q96BD8 255 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 RPL10LQ96L21 214 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SERPINB11Q96P15 392 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 OLFM1Q99784 485 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 YIPF3Q9GZM5 350 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 IL22Q9GZX6 179 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ILKAPQ9H0C8 392 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 UNC93B1Q9H1C4 597 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PPCSQ9HAB8 311 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 PNPLA8Q9NP80 782 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 TCF7L2Q9NQB0 619 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC167Q9P0B6 97 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 GMPR2Q9P2T1 348 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SRRDQ9UH36 339 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 AFF4Q9UHB7 1163 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 CIDEBQ9UHD4 219 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF180Q9UJW8 692 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 SSX2IPQ9Y2D8 614 aa5.65□□□□□ -1.51
LIMA1-215ENST00000552823 AAR2Q9Y312 384 aaKnown RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 ZFP37Q9Y6Q3 630 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-215ENST00000552823 MATN3O15232 486 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TPST1O60507 370 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 KPNA6O60684 536 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms