RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ELOVL6Q9H5J4 265 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 AGO3Q9H9G7 860 aaKnown RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 HPS4Q9NQG7 708 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 NDUFAF1Q9Y375 327 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 PCDHB9Q9Y5E1 797 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 TK2O00142 265 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 ZNF7P17097 686 aaPredicted RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 ZNF460Q14592 562 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 PGS1Q32NB8 556 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 TBCELQ5QJ74 424 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 PKN3Q6P5Z2 889 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 TDRPQ86YL5 185 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 TAGAPQ8N103 731 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 BANPQ8N9N5 519 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 ZNF395Q9H8N7 513 aaPredicted RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 COPG2Q9UBF2 871 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 CYTH4Q9UIA0 394 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SLC25A13Q9UJS0 675 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 LRCH1Q9Y2L9 728 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 E9PAM4 449 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 MLNP12872 115 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 RPL17P18621 184 aaKnown RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 PRKCZQ05513 592 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 WASHC5Q12768 1159 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 PEX6Q13608 980 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SPDYE7PQ495Y7 208 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 RAB6CQ53S08 254 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 OTUD3Q5T2D3 398 aaPredicted RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 POTEHQ6S545 545 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 OTOP2Q7RTS6 562 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SLC35F5Q8WV83 523 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 NXNL1Q96CM4 212 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 RAB6CQ9H0N0 254 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 COG4Q9H9E3 785 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 C4AP0C0L4 1744 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 ZSCAN9O15535 394 aaPredicted RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 ALBP02768 609 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 ECHS1P30084 290 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SOAT1P35610 550 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 LIPMQ5VYY2 423 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 OSTM1Q86WC4 334 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 GPSM1Q86YR5 675 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SLC44A2Q8IWA5 706 aaPredicted RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 DENND6AQ8IWF6 608 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 RBBP8Q99708 897 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 A0A087X1B8 175 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 AMHP03971 560 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 PSMC3P17980 439 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 CLCN5P51795 746 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 CRHR2Q13324 411 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 LRRC23Q53EV4 343 aaPredicted RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 UBAP2Q5T6F2 1119 aaKnown RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 C15orf39Q6ZRI6 1047 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 RBM23Q86U06 439 aaKnown RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 SIKE1Q9BRV8 207 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 RAP2CQ9Y3L5 183 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 TBX18O95935 607 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 IL2P60568 153 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 FSTL4Q6MZW2 842 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 ULK2Q8IYT8 1036 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 RBM15BQ8NDT2 890 aaKnown RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 GRIN3AQ8TCU5 1115 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 RSPH1Q8WYR4 309 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 SLC7A5P2Q9GIP4 190 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 LTBP3Q9NS15 1303 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 TBL1XO60907 577 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 SERPINA6P08185 405 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 CYP3A5P20815 502 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 WARSP23381 471 aaKnown RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 PRKAA2P54646 552 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 ZNF284Q2VY69 593 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 ZNF792Q3KQV3 632 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 ANKS3Q6ZW76 656 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 PIWIL4Q7Z3Z4 852 aaKnown RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 BHLHE22Q8NFJ8 381 aaPredicted RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 THAP11Q96EK4 314 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 ZNF184Q99676 751 aaPredicted RBP16.42■□□□□ 0.22
CUX1-213ENST00000549414 ACBD6Q9BR61 282 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 VWA7Q9Y334 891 aa16.42■□□□□ 0.22
CUX1-213ENST00000549414 GSC2O15499 205 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 CKBP12277 381 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 LRPAP1P30533 357 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 HSPA14Q0VDF9 509 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 SEMA5AQ13591 1074 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 LACTB2Q53H82 288 aaPredicted RBP16.41■□□□□ 0.22
CUX1-213ENST00000549414 ITIH5Q86UX2 942 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 FAM126BQ8IXS8 530 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 ZDHHC14Q8IZN3 488 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 ZNF555Q8NEP9 628 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 ZNF317Q96PQ6 595 aaPredicted RBP16.41■□□□□ 0.22
CUX1-213ENST00000549414 GBA3Q9H227 469 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 ASB8Q9H765 288 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 NRP1O14786 923 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 PLIN3O60664 434 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 NRF1Q16656 503 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 FAM187BQ17R55 369 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 PREPLQ4J6C6 727 aaPredicted RBP16.41■□□□□ 0.22
CUX1-213ENST00000549414 MLPHQ9BV36 600 aaPredicted RBP16.41■□□□□ 0.22
CUX1-213ENST00000549414 HIPK3Q9H422 1215 aa16.41■□□□□ 0.22
CUX1-213ENST00000549414 PARVBQ9HBI1 364 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms