RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 E2F1Q01094 437 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 CDR2Q01850 454 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 NRG1Q02297 640 aaPredicted RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 PTP4A2Q12974 167 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 FZD2Q14332 565 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 LINC01559Q495D7 138 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 TPRG1LQ5T0D9 272 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 RWDD4Q6NW29 188 aaKnown RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 KDM7AQ6ZMT4 941 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 LEKR1Q6ZMV7 388 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 PARS2Q7L3T8 475 aaKnown RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 NLRP14Q86W24 1093 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 ZNF677Q86XU0 584 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 DCBLD1Q8N8Z6 715 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 ZNF511Q8NB15 262 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 OR6K2Q8NGY2 324 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 ENOX1Q8TC92 643 aaKnown RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 GPT2Q8TD30 523 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 ARHGEF2Q92974 986 aaKnown RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 IFT43Q96FT9 208 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 APOLD1Q96LR9 279 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 KLF6Q99612 283 aaPredicted RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 C11orf70Q9BRQ4 267 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 OSBPL2Q9H1P3 480 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 ZDHHC6Q9H6R6 413 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 NLRC4Q9NPP4 1024 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 GPR27Q9NS67 375 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 OR12D3Q9UGF7 316 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 DNAI1Q9UI46 699 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 GGT7Q9UJ14 662 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 RAI2Q9Y5P3 530 aa8.61□□□□□ -1.03
USP28-215ENST00000545608 NYNRINQ9P2P1 1898 aaKnown RBP8.61□□□□□ -1.03
USP28-215ENST00000545608 FASNP49327 2511 aaKnown RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 DMXL2Q8TDJ6 3036 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 LY6G6EA0A0G2JKS1 128 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 C2CD4BA6NLJ0 364 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 C16orf96A6NNT2 1141 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 A6NNZ2 444 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 K7ESM1 405 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 SCAMP1O15126 338 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 SPINT1O43278 529 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 AP1G1O43747 822 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 OPA1O60313 960 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 BRINP1O60477 761 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 NEBLO76041 1014 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 LRIG2O94898 1065 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 S1PR4O95977 384 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 CKMT1AP12532 417 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 UNGP13051 313 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 RHOQP17081 205 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 SDC4P31431 198 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 RFC1P35251 1148 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 SOX5P35711 763 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 PTPN9P43378 593 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 MAPKAPK2P49137 400 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 HDAC4P56524 1084 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 JAM2P57087 298 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 KRT31Q15323 416 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 ARL13BQ3SXY8 428 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 HS1BP3Q53T59 392 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 CT47A1Q5JQC4 288 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 CDKAL1Q5VV42 579 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 CDCP2Q5VXM1 449 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 KIAA1161Q6NSJ0 714 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 WDR59Q6PJI9 974 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 KYAT3Q6YP21 454 aaKnown RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 STRADAQ7RTN6 431 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 PTAR1Q7Z6K3 402 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 DCP2Q8IU60 420 aaKnown RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 RYBPQ8N488 228 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 CCDC185Q8N715 623 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 NETO2Q8NC67 525 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 SNIP1Q8TAD8 396 aaKnown RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 UBE2Q2Q8WVN8 375 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 CENPIQ92674 756 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 ISG20Q96AZ6 181 aaKnown RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 C1QTNF2Q9BXJ5 285 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 MAGEH1Q9H213 219 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 FAM207AQ9NSI2 230 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 TMEM248Q9NWD8 314 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 DNAJC28Q9NX36 388 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 NLGN3Q9NZ94 848 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 KLF15Q9UIH9 416 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 NEU3Q9UQ49 428 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 ITM2BQ9Y287 266 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 SIK3Q9Y2K2 1263 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 PCDHB1Q9Y5F3 818 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 U3KQA8 63 aa8.6□□□□□ -1.03
USP28-215ENST00000545608 TP53BP1Q12888 1972 aaPredicted RBP8.6□□□□□ -1.03
USP28-215ENST00000545608 BAHCC1Q9P281 2608 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 SPTY2D1-AS1A0A0U1RR47 76 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 CXorf51AA0A1B0GTR3 108 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 NEMP2A6NFY4 417 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 KRIT1O00522 736 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 FPGTO14772 594 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 TSPAN6O43657 245 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 KDELR3O43731 214 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 RAMP2O60895 175 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 GSRP00390 522 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 CSF2P04141 144 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms