RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HSPH1Q92598 858 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 DYRK4Q9NR20 520 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 TM7SF3Q9NS93 570 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 ZNHIT6Q9NWK9 470 aaKnown RBP14.4□□□□□ -0.1
USP28-209ENST00000540925 RCOR3Q9P2K3 495 aaPredicted RBP14.4□□□□□ -0.1
USP28-209ENST00000540925 DKK3Q9UBP4 350 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 UBA2Q9UBT2 640 aaPredicted RBP14.4□□□□□ -0.1
USP28-209ENST00000540925 ATRXP46100 2492 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 CEP295Q9C0D2 2601 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 TSPAN11A1L157 253 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 AKR1B15C9JRZ8 316 aaPredicted RBP14.39□□□□□ -0.11
USP28-209ENST00000540925 H0Y8X5 98 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 KRIT1O00522 736 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 INSIG1O15503 277 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 DAPK3O43293 454 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 AKR1B10O60218 316 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 SH3BP5O60239 455 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 PCDHGA12O60330 932 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 IGSF6O95976 241 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 UGT2B4P06133 528 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 CD48P09326 243 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 TPM1P09493 284 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 AMPD1P23109 780 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 MAT2AP31153 395 aaKnown RBP14.39□□□□□ -0.11
USP28-209ENST00000540925 RGRP47804 291 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 CSNK1DP48730 415 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 NXPH1P58417 271 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 RHOAP61586 193 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 IL10RBQ08334 325 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 FGL2Q14314 439 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 SHBQ15464 509 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 SEL1L3Q68CR1 1132 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 GDPD4Q6W3E5 623 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 GAS2L3Q86XJ1 694 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 SPATS2Q86XZ4 545 aaKnown RBP14.39□□□□□ -0.11
USP28-209ENST00000540925 ZNF354CQ86Y25 554 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 NAXDQ8IW45 347 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 RAB7BQ96AH8 199 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 TRIM5Q9C035 493 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 SPTLC3Q9NUV7 552 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 CTTNBP2NLQ9P2B4 639 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 LCMT1Q9UIC8 334 aa14.39□□□□□ -0.11
USP28-209ENST00000540925 A0A1B0GTQ1 180 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 PRAMEF26H0Y7S4 382 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 TLR4O00206 839 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 KCNK3O14649 394 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 MUSKO15146 869 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 BUB1BO60566 1050 aaPredicted RBP14.38□□□□□ -0.11
USP28-209ENST00000540925 LCA5LO95447 670 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 ARL4AP40617 200 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 TAS2R40P59535 323 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 SHC2P98077 582 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 OVGP1Q12889 678 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 DPYSL3Q14195 570 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 RFTN1Q14699 578 aaPredicted RBP14.38□□□□□ -0.11
USP28-209ENST00000540925 TSR1Q2NL82 804 aaKnown RBP14.38□□□□□ -0.11
USP28-209ENST00000540925 ATP13A4Q4VNC1 1196 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 KIAA1161Q6NSJ0 714 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 FBXL19Q6PCT2 694 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 GLRX5Q86SX6 157 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 ZSCAN30Q86W11 494 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 TSEN2Q8NCE0 465 aaKnown RBP14.38□□□□□ -0.11
USP28-209ENST00000540925 HCAR2Q8TDS4 363 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 FAF2Q96CS3 445 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 MRFAP1L1Q96HT8 127 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 EXOC2Q96KP1 924 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 CCDC42Q96M95 316 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 KLHL32Q96NJ5 620 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 ZNF599Q96NL3 588 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 CAMK1GQ96NX5 476 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 PSKH2Q96QS6 385 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 C1QTNF2Q9BXJ5 285 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 DEF6Q9H4E7 631 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 SLC32A1Q9H598 525 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 ERVMER34-1Q9H9K5 563 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 AASDHPPTQ9NRN7 309 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 GPR27Q9NS67 375 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 IPO11Q9UI26 975 aaKnown RBP14.38□□□□□ -0.11
USP28-209ENST00000540925 PCOLCE2Q9UKZ9 415 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 INTUQ9ULD6 942 aa14.38□□□□□ -0.11
USP28-209ENST00000540925 TRPM6Q9BX84 2022 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 TSPAN6O43657 245 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 DFNA5O60443 496 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 MAFKO60675 156 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 TIMP2P16035 220 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 PRLRP16471 622 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 FECHP22830 423 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 RXRGP48443 463 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 CCT8P50990 548 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 ZNF75DP51815 510 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 C21orf59P57076 290 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 RPS21P63220 83 aaKnown RBP14.37□□□□□ -0.11
USP28-209ENST00000540925 NSUN2Q08J23 767 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP28-209ENST00000540925 MMRN1Q13201 1228 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 HNRNPDQ14103 355 aaKnown RBP14.37□□□□□ -0.11
USP28-209ENST00000540925 TMCO3Q6UWJ1 677 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 KANSL1Q7Z3B3 1105 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 ADAT2Q7Z6V5 191 aaKnown RBP14.37□□□□□ -0.11
USP28-209ENST00000540925 ABI3BPQ7Z7G0 1075 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 RYBPQ8N488 228 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms