RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 TOMM20Q15388 145 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 NRF1Q16656 503 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 RFX4Q33E94 735 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 PABPC1LQ4VXU2 614 aaKnown RBP10.74□□□□□ -0.69
CLIP1-209ENST00000537178 STXBP5Q5T5C0 1151 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 DENND5AQ6IQ26 1287 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 DOK6Q6PKX4 331 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 TRPV3Q8NET8 790 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 SYTL5Q8TDW5 730 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-209ENST00000537178 PYDC1Q8WXC3 89 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 ZHX1-C8orf76Q96EF9 292 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 CRISPLD1Q9H336 500 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 EVA1BQ9NVM1 165 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 ADAM28Q9UKQ2 775 aa10.74□□□□□ -0.69
CLIP1-209ENST00000537178 CARNS1A5YM72 827 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 QSOX1O00391 747 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 FGF10O15520 208 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 POMCP01189 267 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 LYNP07948 512 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 NTRK3Q16288 839 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 PFKFB4Q16877 469 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 INSCQ1MX18 579 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 SPESP1Q6UW49 350 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 PACS1Q6VY07 963 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ARHGAP36Q6ZRI8 547 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 GMCL1P1Q8NEA9 526 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 PHF10Q8WUB8 498 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 CAPSLQ8WWF8 208 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 S100ZQ8WXG8 99 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 SHISA4Q96DD7 197 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 COX4I2Q96KJ9 171 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ELL3Q9HB65 397 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 CCNB1IP1Q9NPC3 277 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 FAM50BQ9Y247 325 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 MTF2Q9Y483 593 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 IFNA16P05015 189 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 CTSEP14091 401 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 POLR2EP19388 210 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 RPL4P36578 427 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 GRIA3P42263 894 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 OMPP47874 163 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ZNF549Q6P9A3 640 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ZNF248Q8NDW4 579 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 COL26A1Q96A83 441 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 EHD4Q9H223 541 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 RHBGQ9H310 441 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 TOR4AQ9NXH8 423 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 RSL24D1Q9UHA3 163 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 NFASCO94856 1347 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 UMODL1Q5DID0 1318 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ULK1O75385 1050 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 NR2F6P10588 404 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 RBL1P28749 1068 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 CLCN5P51795 746 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 AP1S2P56377 157 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 BNIP2Q12982 314 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 BTG3Q14201 252 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 FNDC3BQ53EP0 1204 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 WDR59Q6PJI9 974 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 PIWIL4Q7Z3Z4 852 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 TAF8Q7Z7C8 310 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 PSTKQ8IV42 348 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 KATNAL2Q8IYT4 538 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 CCDC185Q8N715 623 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 SLC2A14Q8TDB8 520 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 HAVCR1Q96D42 359 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 TLR10Q9BXR5 811 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 SETD4Q9NVD3 440 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 PIH1D1Q9NWS0 290 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 OR10H1Q9Y4A9 318 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 CHRNGP07510 517 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 DBTP11182 482 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 HOXB6P17509 224 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 RPL5P46777 297 aaKnown RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 RARRES1P49788 294 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 GMFBP60983 142 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 BNC1Q01954 994 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 GRIK4Q16099 956 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 NET1Q7Z628 596 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 TTC7BQ86TV6 843 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 SCUBE3Q8IX30 993 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 FUKQ8N0W3 1084 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 TMEM86AQ8N2M4 240 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ZNF540Q8NDQ6 660 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 MCCC1Q96RQ3 725 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 MTG1Q9BT17 334 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 ALG9Q9H6U8 611 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 XPNPEP3Q9NQH7 507 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 GPC6Q9Y625 555 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-209ENST00000537178 GAKO14976 1311 aa10.73□□□□□ -0.69
CLIP1-209ENST00000537178 FAM92AA1XBS5 289 aa10.72□□□□□ -0.69
CLIP1-209ENST00000537178 URADA6NGE7 173 aa10.72□□□□□ -0.69
CLIP1-209ENST00000537178 PDE2AO00408 941 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-209ENST00000537178 SLC9A3R1O14745 358 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-209ENST00000537178 NR2F1P10589 423 aa10.72□□□□□ -0.69
CLIP1-209ENST00000537178 RAB25P57735 213 aa10.72□□□□□ -0.69
CLIP1-209ENST00000537178 PSME3P61289 254 aa10.72□□□□□ -0.69
CLIP1-209ENST00000537178 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-209ENST00000537178 PTGR2Q8N8N7 351 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-209ENST00000537178 ZNF398Q8TD17 642 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms