RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MAFKO60675 156 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 RAMP2O60895 175 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 PHF2O75151 1096 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 LUC7L3O95232 432 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 SLU7O95391 586 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 TYRP14679 529 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 GLULP15104 373 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 HOXD9P28356 352 aaPredicted RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 EIF2DP41214 584 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 FNTAP49354 379 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 PAPOLAP51003 745 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 EIF3EP60228 445 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 DYNLT1P63172 113 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 GNA12Q03113 381 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 IL10RBQ08334 325 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 PPIDQ08752 370 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 GALNT2Q10471 571 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 SERINC3Q13530 473 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 HTR4Q13639 388 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 OASLQ15646 514 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 ANO4Q32M45 955 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 SLC45A4Q5BKX6 768 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 DARS2Q6PI48 645 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 C1orf228Q6PIY5 440 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 CCDC137Q6PK04 289 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 NPNTQ6UXI9 565 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 C4orf22Q6V702 233 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 TPGS1Q6ZTW0 290 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 SYDE1Q6ZW31 735 aaPredicted RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 ADAT2Q7Z6V5 191 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 ALYREFQ86V81 257 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 ARHGAP12Q8IWW6 846 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 CARNMT1Q8N4J0 409 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 CPA6Q8N4T0 437 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 GRK7Q8WTQ7 553 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 TFB1MQ8WVM0 346 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 C1orf54Q8WWF1 131 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 HDAC11Q96DB2 347 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 LMLNQ96KR4 655 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 PRICKLE1Q96MT3 831 aaPredicted RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 ZNF599Q96NL3 588 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 OLFM3Q96PB7 478 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 VAT1Q99536 393 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 RPP25Q9BUL9 199 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 CARD6Q9BX69 1037 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 ACE2Q9BYF1 805 aaPredicted RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 NOL6Q9H6R4 1146 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 ECT2Q9H8V3 914 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 USP29Q9HBJ7 922 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 DNPEPQ9ULA0 475 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 HPCAL4Q9UM19 191 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 ZNF148Q9UQR1 794 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 SLC27A6Q9Y2P4 619 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 OR51B4Q9Y5P0 310 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 WNT6Q9Y6F9 365 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 ZDBF2Q9HCK1 2354 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 ZNF318Q5VUA4 2279 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 KIF26AQ9ULI4 1882 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 CFAP69A5D8W1 941 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 C5orf60A6NFR6 353 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 ZSCAN5CA6NGD5 496 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 EFCAB8A8MWE9 144 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 RASA4BC9J798 803 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 H7C0C1 242 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 MATN3O15232 486 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 RASA4O43374 803 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 CACNG3O60359 315 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 GCATO75600 419 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 B3GALT4O96024 378 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 CYP17A1P05093 508 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 CISD3P0C7P0 127 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 ADH5P11766 374 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 PECAM1P16284 738 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 AVPR2P30518 371 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 GDI1P31150 447 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 GARSP41250 739 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 ATP5OP48047 213 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 RENBPP51606 427 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 IRAK1P51617 712 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 SGSHP51688 502 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 DRG2P55039 364 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 VCPP55072 806 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 GBE1Q04446 702 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 SULT2A1Q06520 285 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 C19orf57Q0VDD7 668 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 HNRNPDQ14103 355 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 DHX34Q14147 1143 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 E2F5Q15329 346 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 ITPRIPL2Q3MIP1 535 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 INO80DQ53TQ3 878 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 FSCBQ5H9T9 825 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 RNF219Q5W0B1 726 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 CXorf57Q6NSI4 855 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 TIGD7Q6NT04 549 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 ZC3H18Q86VM9 953 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 MFN1Q8IWA4 741 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 CCDC105Q8IYK2 499 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 CCNYQ8ND76 341 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 RSAD2Q8WXG1 361 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 EXOC4Q96A65 974 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms